; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0011488 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011488
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description40S ribosomal protein S13-like
Genome locationchr11:7853399..7853554
RNA-Seq ExpressionIVF0011488
SyntenyIVF0011488
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043612.1 40S ribosomal protein S13 [Cucumis melo var. makuwa]8.53e-1983.02Show/hide
Query:  MCVFLLL--SKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +C+ ++L  S GLAPEIPEDLY LIKKAVSIRKHLERNRKDKDSKFRLILVDS
Subjt:  MCVFLLL--SKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS

KAA0046917.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa]1.09e-1889.36Show/hide
Query:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L + GLAPEIPEDLY LIKKAVSIRKHLERNRKDKDSKFRLILVDS
Subjt:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS

KAA0049888.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa]1.09e-1889.36Show/hide
Query:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L + GLAPEIPEDLY LIKKAVSIRKHLERNRKDKDSKFRLILVDS
Subjt:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS

KAA0066416.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa]4.64e-2091.49Show/hide
Query:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L + GLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS
Subjt:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS

TYK07625.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa]1.09e-1889.36Show/hide
Query:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L + GLAPEIPEDLY LIKKAVSIRKHLERNRKDKDSKFRLILVDS
Subjt:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS

TrEMBL top hitse value%identityAlignment
A0A0N4V0I2 40S ribosomal protein S132.7e-1385.71Show/hide
Query:  VFLLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        V +L SKG+APEIPEDLY LIKKAVSIRKHLERNRKDKDSK+RLILV+S
Subjt:  VFLLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS

A0A5A7TK12 40S ribosomal protein S131.6e-1383.02Show/hide
Query:  MCVFLLL--SKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +C+ ++L  S GLAPEIPEDLY LIKKAVSIRKHLERNRKDKDSKFRLILVDS
Subjt:  MCVFLLL--SKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS

A0A5A7U9F0 Putative ribosomal protein S132.0e-1387.23Show/hide
Query:  MCVFLLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLI
        MCVFLLLSKGLAPEIPEDLY LIKK VSIRKHLERNRKDKDSK + +
Subjt:  MCVFLLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLI

A0A5A7VJ93 40S ribosomal protein S13-like3.1e-1491.49Show/hide
Query:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L + GLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS
Subjt:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS

A8UAD8 40S ribosomal protein S132.0e-1389.36Show/hide
Query:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L +KGLAPEIPEDLY LIKKAVSIRKHLERNRKDKDSKFRLILV+S
Subjt:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS

SwissProt top hitse value%identityAlignment
P05756 40S ribosomal protein S134.7e-1582.98Show/hide
Query:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L S GLAPEIPEDLY LIKKAVS+RKHLERNRKDKD+KFRLIL++S
Subjt:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS

P59223 40S ribosomal protein S13-16.1e-1585.11Show/hide
Query:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L + GLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILV+S
Subjt:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS

P62299 40S ribosomal protein S133.6e-1581.63Show/hide
Query:  VFLLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        V +L +KG+APEIPEDLY LIKKAV+IRKHLERNRKDKDSK+RLILV+S
Subjt:  VFLLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS

P62300 40S ribosomal protein S133.6e-1581.63Show/hide
Query:  VFLLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        V +L +KG+APEIPEDLY LIKKAV+IRKHLERNRKDKDSK+RLILV+S
Subjt:  VFLLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS

P62302 40S ribosomal protein S132.7e-1587.23Show/hide
Query:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L + GLAPEIPEDLY LIKKAVSIRKHLERNRKDKDSKFRLILV+S
Subjt:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S154.3e-1685.11Show/hide
Query:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L + GLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILV+S
Subjt:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS

AT4G00100.1 ribosomal protein S13A4.3e-1685.11Show/hide
Query:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS
        +L + GLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILV+S
Subjt:  LLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCCTTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAATAG
GAAGGACAAAGACTCCAAGTTCAGGTTGATTCTTGTTGATTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCCTTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAATAG
GAAGGACAAAGACTCCAAGTTCAGGTTGATTCTTGTTGATTCTTGA
Protein sequenceShow/hide protein sequence
MCVFLLLSKGLAPEIPEDLYPLIKKAVSIRKHLERNRKDKDSKFRLILVDS