; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0011512 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011512
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRibonuclease H2 subunit B
Genome locationchr03:23830184..23834764
RNA-Seq ExpressionIVF0011512
SyntenyIVF0011512
Gene Ontology termsGO:0000455 - enzyme-directed rRNA pseudouridine synthesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0032299 - ribonuclease H2 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0009982 - pseudouridine synthase activity (molecular function)
InterPro domainsIPR019024 - Ribonuclease H2 subunit B, wHTH domain
IPR040456 - Ribonuclease H2 subunit B
IPR041195 - Rnh202, triple barrel domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065008.1 ribonuclease H2 subunit B isoform X1 [Cucumis melo var. makuwa]2.65e-19098.13Show/hide
Query:  GCSMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK
        GCSMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK
Subjt:  GCSMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK

Query:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ
        GDDPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ
Subjt:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ

Query:  PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNI
        PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPK E +S+ I
Subjt:  PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNI

KAG6598802.1 Ribonuclease H2 subunit B, partial [Cucurbita argyrosperma subsp. sororia]1.32e-18793.19Show/hide
Query:  GCSMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK
        GCSMAW+EGVEETRILIAPDHGVKE GTGC LSLRHPKSGN TCFLYVNE+LEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK
Subjt:  GCSMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK

Query:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ
        GDDPGKFRQLDDIMFINGYPGYLHLLS+AE SMQVVCEVKE+GSS+FFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEK+TLSDAVSILGEYLKD+
Subjt:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ

Query:  PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRK
        PWLKLLCDHLKLNFAEATRKASD+EK P SIEN FDSISQDK+ S AKNTRNGKQAKKPKVETESRNIKDMFSKA KRK
Subjt:  PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRK

XP_008445067.1 PREDICTED: ribonuclease H2 subunit B isoform X1 [Cucumis melo]1.63e-20099.29Show/hide
Query:  GCSMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK
        GCSMAWYEGVEE RILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK
Subjt:  GCSMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK

Query:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ
        GDDPGKFRQLDDIMFINGYPGYLHLLSLAE SMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ
Subjt:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ

Query:  PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
        PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
Subjt:  PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR

XP_008445068.1 PREDICTED: ribonuclease H2 subunit B isoform X3 [Cucumis melo]1.87e-19899.28Show/hide
Query:  MAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
        MAWYEGVEE RILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
Subjt:  MAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD

Query:  PGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQPWL
        PGKFRQLDDIMFINGYPGYLHLLSLAE SMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQPWL
Subjt:  PGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQPWL

Query:  KLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
        KLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
Subjt:  KLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR

XP_016899926.1 PREDICTED: ribonuclease H2 subunit B isoform X2 [Cucumis melo]6.10e-19898.93Show/hide
Query:  GCSMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK
        GCSMAWYEGVEE RILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMK 
Subjt:  GCSMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK

Query:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ
        GDDPGKFRQLDDIMFINGYPGYLHLLSLAE SMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ
Subjt:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ

Query:  PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
        PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
Subjt:  PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR

TrEMBL top hitse value%identityAlignment
A0A0A0LPA1 Ribonuclease H2 subunit B1.9e-17185.67Show/hide
Query:  MDALGLIQPISKRLCFALRSVHYSLSLWRARFFPVLGFVWFPPSTSTFPLSGELFT-----------------------GCSMAWYEGVEETRILIAPDH
        MD +GLIQPISKRLCF LR+VHY LS WRARFF VL FV FPPSTSTF  SGELFT                       GCSMAW EGVEETRILIAPDH
Subjt:  MDALGLIQPISKRLCFALRSVHYSLSLWRARFFPVLGFVWFPPSTSTFPLSGELFT-----------------------GCSMAWYEGVEETRILIAPDH

Query:  GVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPG
        GVKE  TGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYV EDGRLYSATPVDPVFIFLPIFEEARMKKGDD GKFRQLDDIMFINGYPG
Subjt:  GVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPG

Query:  YLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQPWLKLLCDHLKLNFAEATRKA
        YLHLL LAE  MQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLK+TLCTLDKNYAAREEKETL DAVSILGEYLKDQPWLKLLCDHLKLNFAEATRKA
Subjt:  YLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQPWLKLLCDHLKLNFAEATRKA

Query:  SDSEKAPTSIENKFDSISQDK----SWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
        SDSE+APTSIEN FDSISQDK    S S AKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
Subjt:  SDSEKAPTSIENKFDSISQDK----SWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR

A0A1S3BBT5 Ribonuclease H2 subunit B1.2e-15999.29Show/hide
Query:  GCSMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK
        GCSMAWYEGVEE RILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK
Subjt:  GCSMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK

Query:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ
        GDDPGKFRQLDDIMFINGYPGYLHLLSLAE SMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ
Subjt:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ

Query:  PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
        PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
Subjt:  PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR

A0A1S3BCJ9 Ribonuclease H2 subunit B2.6e-15799.28Show/hide
Query:  MAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
        MAWYEGVEE RILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
Subjt:  MAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD

Query:  PGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQPWL
        PGKFRQLDDIMFINGYPGYLHLLSLAE SMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQPWL
Subjt:  PGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQPWL

Query:  KLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
        KLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
Subjt:  KLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR

A0A1S4DVB3 Ribonuclease H2 subunit B1.5e-15798.93Show/hide
Query:  GCSMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK
        GCSMAWYEGVEE RILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARM K
Subjt:  GCSMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK

Query:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ
        GDDPGKFRQLDDIMFINGYPGYLHLLSLAE SMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ
Subjt:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ

Query:  PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
        PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
Subjt:  PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR

A0A5A7VBL5 Ribonuclease H2 subunit B4.3e-15298.13Show/hide
Query:  GCSMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK
        GCSMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK
Subjt:  GCSMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKK

Query:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ
        GDDPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ
Subjt:  GDDPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQ

Query:  PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNI
        PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPK E +S+ I
Subjt:  PWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNI

SwissProt top hitse value%identityAlignment
Q28GD9 Ribonuclease H2 subunit B1.5e-1627.27Show/hide
Query:  GVEETRILIAP----DHGVKEIGTGCFLSLRHPKSGNPTCFLYVN--EMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD
        G  E  +L+AP    D          F  LR P +   + FL+++  + + E+  F + Y SWF+G  V +DGRL  ATP+DP+F+ L       +K   
Subjt:  GVEETRILIAP----DHGVKEIGTGCFLSLRHPKSGNPTCFLYVN--EMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD

Query:  DPGKFRQLDDIMFINGYPGYLHLLSLAETSMQV--VCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTL-------------CTLDKNYAAREEKET--
        + GKF+ ++ I+    +P    LL     S  +  V E KE+GS +F++    K L WL  KV    K L              T  +N    + KE   
Subjt:  DPGKFRQLDDIMFINGYPGYLHLLSLAETSMQV--VCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTL-------------CTLDKNYAAREEKET--

Query:  LSDAVSILGEYLKD---QPWLKLL-CDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETES-RNIKDMFSKAAK
           A  ++ EYL +   +   K L    L     E   K     +AP   E  +   + D     + +     Q    KV+    +NI   FS  AK
Subjt:  LSDAVSILGEYLKD---QPWLKLL-CDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETES-RNIKDMFSKAAK

Q3ZBI3 Ribonuclease H2 subunit B3.5e-1830.33Show/hide
Query:  FLSLRHPKSGNPTCFLY--VNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHLLSL
        F+ L +P SG  T +L+      L EI  FK+   SWF+ + V   G L+ ATPVDP+F+ L    +A   K    GKF+ LD ++  + +P  + LL L
Subjt:  FLSLRHPKSGNPTCFLY--VNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHLLSL

Query:  AETS--MQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQPWLK----LLCDHLKLNFAEATRKAS
         E    +Q V E KEV   ++++    K L WL  KV Q    L T   N +AR +         +  +  KD+ +++    L+ D++    ++   K  
Subjt:  AETS--MQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQPWLK----LLCDHLKLNFAEATRKAS

Query:  DSEKAPTSIEN
           + P S+ N
Subjt:  DSEKAPTSIEN

Q5HZP1 Ribonuclease H2 subunit B1.9e-1934.12Show/hide
Query:  GVEETRILIAPDH---GVKEIG-TGCFLSLRHPKSGNPTCFLYVN--EMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD
        G  E  +L+AP+      K +     F+ LR P +     FL++N  + + E+  F + Y SWF+G  V +DGRL  ATP+DP+F+ LP      +K   
Subjt:  GVEETRILIAPDH---GVKEIG-TGCFLSLRHPKSGNPTCFLYVN--EMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD

Query:  DPGKFRQLDDIMFINGYP--GYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTL
        + GKF+ ++ I+    +P  G L   +    S+  V E KE+GS +F +    K L WL  KV Q  K L
Subjt:  DPGKFRQLDDIMFINGYP--GYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTL

Q5TBB1 Ribonuclease H2 subunit B6.2e-1533.12Show/hide
Query:  FLSLRHPKSGNPTCFLY--VNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHLLSL
        F+ L +P SG    +L+    + L E+  FK+ + SWF+   V   G L+ ATPVDP+F+ L       + K D  GKF+ LD ++  N +P  + LL L
Subjt:  FLSLRHPKSGNPTCFLY--VNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHLLSL

Query:  --AETSMQVVCEVK---EVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAR
           E  +  V E K   E+ + ++++    K L WL  KV Q    L T + N ++R
Subjt:  --AETSMQVVCEVK---EVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAR

Q80ZV0 Ribonuclease H2 subunit B2.8e-1527.49Show/hide
Query:  FLSLRHPKSGNPTCFL--YVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHLLSL
        F+ L +P SG    +L     + L EI  FK+ + SWF+   V   G L+ ATP+DP+F+ L       + K    GK++ LD ++  + +P    LL  
Subjt:  FLSLRHPKSGNPTCFL--YVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHLLSL

Query:  --AETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQPWLK----LLCDHLKLNFAEATRKAS
           E S++ V E KEV S ++++    K L WL  KV Q    L   + N  AR +         +  +  K++ +++    L+ D++    ++   K  
Subjt:  --AETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQPWLK----LLCDHLKLNFAEATRKAS

Query:  DSEKAPTSIEN
           + P S+ N
Subjt:  DSEKAPTSIEN

Arabidopsis top hitse value%identityAlignment
AT4G20325.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).1.1e-9661.37Show/hide
Query:  SMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD
        S  W+EG E+TR+LIAPD G      G  L+LRHPKS N TCFL+ NEML+E+ WFKQSY SWFLGDY++EDG LY ATPVDPVFI LPIF+EARMKKG+
Subjt:  SMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD

Query:  DPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQPW
        + GKFRQLD+I+F+ GYPGY HLLSLAE  M++VC+ +EVGS +F+RLD+SKVLAWL  K+  LK +L  LDKNYAA++EK+TL D+VSI+GEYLK +PW
Subjt:  DPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQPW

Query:  LKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRK
        LKLL DHL L F + T K ++ E  PT+ EN   +++   S  +  N + GKQ K+ KVET S+NI+DMFS+A K+K
Subjt:  LKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRK

AT4G20325.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).8.8e-6568.79Show/hide
Query:  SMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD
        S  W+EG E+TR+LIAPD G      G  L+LRHPKS N TCFL+ NEML+E+ WFKQSY SWFLGDY++EDG LY ATPVDPVFI LPIF+EARMKKG+
Subjt:  SMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD

Query:  DPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWL
        + GKFRQLD+I+F+ GYPGY HLLSLAE  M++VC+ +EVGS +F+RLD+SKVLAWL
Subjt:  DPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCCTTGGGCCTCATTCAGCCCATTTCAAAACGCTTATGCTTCGCGCTTCGATCAGTTCATTATTCTCTCTCTCTCTGGCGCGCGCGGTTTTTCCCGGTTCTCGG
TTTCGTTTGGTTCCCGCCGTCGACGTCCACATTTCCGTTATCCGGCGAGTTGTTCACTGGTTGTTCCATGGCTTGGTACGAAGGCGTTGAGGAAACACGTATCCTCATTG
CTCCTGATCATGGGGTCAAAGAAATTGGTACTGGATGCTTTCTTTCACTTCGCCATCCGAAATCAGGAAACCCAACATGTTTCTTATATGTAAATGAGATGTTAGAGGAA
ATTCACTGGTTCAAGCAGTCATATTCATCGTGGTTTTTGGGAGACTATGTTACTGAAGATGGCCGTCTGTATTCTGCCACCCCAGTAGATCCTGTATTCATTTTCTTGCC
CATTTTTGAGGAAGCTAGAATGAAGAAGGGGGATGATCCTGGGAAATTCAGGCAGTTAGATGACATAATGTTCATCAATGGGTATCCTGGATATCTGCATTTACTGTCCC
TTGCAGAGACGTCTATGCAAGTAGTTTGTGAGGTCAAAGAAGTCGGATCATCTAGGTTTTTTAGGCTCGATGATTCAAAGGTATTGGCATGGTTATATCACAAGGTATGC
CAACTAAAAAAAACTCTATGCACACTGGATAAAAACTATGCTGCAAGGGAAGAAAAAGAAACATTAAGCGACGCCGTTTCGATTTTAGGGGAATACTTGAAGGATCAACC
TTGGTTGAAGCTTTTATGTGACCATCTCAAGTTAAATTTTGCTGAAGCAACCAGAAAAGCATCGGATTCGGAAAAGGCTCCTACTAGCATAGAGAACAAATTTGATTCTA
TCTCACAGGATAAGAGTTGGAGTGACGCAAAGAATACGAGAAATGGAAAGCAAGCAAAGAAGCCTAAGGTGGAGACAGAATCACGGAACATCAAGGACATGTTTTCAAAG
GCTGCAAAAAGAAAAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCCTTGGGCCTCATTCAGCCCATTTCAAAACGCTTATGCTTCGCGCTTCGATCAGTTCATTATTCTCTCTCTCTCTGGCGCGCGCGGTTTTTCCCGGTTCTCGG
TTTCGTTTGGTTCCCGCCGTCGACGTCCACATTTCCGTTATCCGGCGAGTTGTTCACTGGTTGTTCCATGGCTTGGTACGAAGGCGTTGAGGAAACACGTATCCTCATTG
CTCCTGATCATGGGGTCAAAGAAATTGGTACTGGATGCTTTCTTTCACTTCGCCATCCGAAATCAGGAAACCCAACATGTTTCTTATATGTAAATGAGATGTTAGAGGAA
ATTCACTGGTTCAAGCAGTCATATTCATCGTGGTTTTTGGGAGACTATGTTACTGAAGATGGCCGTCTGTATTCTGCCACCCCAGTAGATCCTGTATTCATTTTCTTGCC
CATTTTTGAGGAAGCTAGAATGAAGAAGGGGGATGATCCTGGGAAATTCAGGCAGTTAGATGACATAATGTTCATCAATGGGTATCCTGGATATCTGCATTTACTGTCCC
TTGCAGAGACGTCTATGCAAGTAGTTTGTGAGGTCAAAGAAGTCGGATCATCTAGGTTTTTTAGGCTCGATGATTCAAAGGTATTGGCATGGTTATATCACAAGGTATGC
CAACTAAAAAAAACTCTATGCACACTGGATAAAAACTATGCTGCAAGGGAAGAAAAAGAAACATTAAGCGACGCCGTTTCGATTTTAGGGGAATACTTGAAGGATCAACC
TTGGTTGAAGCTTTTATGTGACCATCTCAAGTTAAATTTTGCTGAAGCAACCAGAAAAGCATCGGATTCGGAAAAGGCTCCTACTAGCATAGAGAACAAATTTGATTCTA
TCTCACAGGATAAGAGTTGGAGTGACGCAAAGAATACGAGAAATGGAAAGCAAGCAAAGAAGCCTAAGGTGGAGACAGAATCACGGAACATCAAGGACATGTTTTCAAAG
GCTGCAAAAAGAAAAAGATGA
Protein sequenceShow/hide protein sequence
MDALGLIQPISKRLCFALRSVHYSLSLWRARFFPVLGFVWFPPSTSTFPLSGELFTGCSMAWYEGVEETRILIAPDHGVKEIGTGCFLSLRHPKSGNPTCFLYVNEMLEE
IHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHLLSLAETSMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVC
QLKKTLCTLDKNYAAREEKETLSDAVSILGEYLKDQPWLKLLCDHLKLNFAEATRKASDSEKAPTSIENKFDSISQDKSWSDAKNTRNGKQAKKPKVETESRNIKDMFSK
AAKRKR