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IVF0011548 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011548
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionstructure-specific endonuclease subunit slx1
Genome locationchr04:22677710..22680701
RNA-Seq ExpressionIVF0011548
SyntenyIVF0011548
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsIPR035901 - GIY-YIG endonuclease superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018060.1 slx1, partial [Cucurbita argyrosperma subsp. argyrosperma]4.47e-6364.88Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGF
        MRLLSQTFR QK PIS+P + KSSSSSTK PTLIVK  EP+PK+WCVYLIISSN P K    +      +LKQHNGEIKGGAKAT+AGRPWICAC IHGF
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGF

Query:  KDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDP
        KDQ            I RK+ + +KE+     +D+ TLRLLK RQRALGKVK LFDC+ FEFDW+LDP
Subjt:  KDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDP

XP_004151512.1 structure-specific endonuclease subunit SLX1 [Cucumis sativus]2.13e-8175.29Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHG
        MRLLS TFRC KPPISNP L KSSSSS+K PTLIVK E +PK KQWCVYLIISSNSP K    +      +LKQHNGEIKGGAKAT+AGRPWICACTIHG
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHG

Query:  FKDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
        FKDQ            +SRKISYEKKE+DVGK LD+QTLRLLKHR+RALGKVKCLFDCS FEFDWKLDPF
Subjt:  FKDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF

XP_008461838.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo]8.32e-9784.62Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGF
        MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSP K    +      +LKQHNGEIKGGAKATQAGRPWICACTIHGF
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGF

Query:  KDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
        KDQ            +SRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
Subjt:  KDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF

XP_022934184.1 structure-specific endonuclease subunit slx1 [Cucurbita moschata]3.15e-6364.88Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGF
        MRLLSQTFR QK PIS+P + KSSSSSTK PTLIVK  EP+PK+WCVYLIISSN P K    +      +LKQHNGEIKGGAKAT+AGRPWICAC IHGF
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGF

Query:  KDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDP
        KDQ            I RK+ + +KE+     +D+ TLRLLK RQRALGKVK LFDC+ FEFDW+LDP
Subjt:  KDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDP

XP_038903984.1 structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida]5.44e-7973.37Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGF
        MRLLSQTFR QKP  SN +L KSSSSSTK P LIVK  EPKPKQWCVYLIISSNSP K    +      +LKQHNGEIKGGAKAT+ GRPW+CACTIHGF
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGF

Query:  KDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
        KDQ            +SRKISY+KKEDD+GKQ+D+QTLRLLKHRQRALGKVKCLFDCS FEF+WKLDPF
Subjt:  KDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ9 GIY-YIG domain-containing protein2.4e-6275.29Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHG
        MRLLS TFRC KPPISNP L KSSSSS+K PTLIVK E +PK KQWCVYLIISSNSP K    +      +LKQHNGEIKGGAKAT+AGRPWICACTIHG
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHG

Query:  FKDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
        FKDQ            +SRKISYEKKE+DVGK LD+QTLRLLKHR+RALGKVKCLFDCS FEFDWKLDPF
Subjt:  FKDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF

A0A1S3CFH5 structure-specific endonuclease subunit slx14.7e-7484.62Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGF
        MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSP K    +      +LKQHNGEIKGGAKATQAGRPWICACTIHGF
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGF

Query:  KDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
        KDQ            +SRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
Subjt:  KDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF

A0A6J1DGL6 structure-specific endonuclease subunit SLX15.5e-4661.4Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEP--KPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIH
        MRLLS TFRC K PISNP+   SSSSSTK P+      E   KPK WCVYLIISSNSP K    +      +LKQHNGEIKGGAKAT+AGRPW+CAC IH
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEP--KPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIH

Query:  GFKDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
        GFKDQ            +SRKI++++K+DD  +Q D Q LRLLK+RQRAL KVK +FDCS FEFD +LDPF
Subjt:  GFKDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF

A0A6J1F1V2 structure-specific endonuclease subunit slx13.4e-4864.88Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGF
        MRLLSQTFR QK PIS+P + KSSSSSTK PTLIVK  EP+PK+WCVYLIISSN P K    +      +LKQHNGEIKGGAKAT+AGRPWICAC IHGF
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGF

Query:  KDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDP
        KDQ            I RK+ + +KE     ++D+ TLRLLK RQRALGKVK LFDC+ FEFDW+LDP
Subjt:  KDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDP

A0A6J1J5C9 structure-specific endonuclease subunit slx1 isoform X14.5e-4863.91Show/hide
Query:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGF
        MRLLSQTFR QK PIS+P + KSSSSSTK PTL +K  EP+ K+WCVYLIISSN P K    +      +LKQHNGEIKGGAKAT+AGRPWICAC IHGF
Subjt:  MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGF

Query:  KDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
        K+Q            I RK+S+ +KE     ++D+QTLRLLK RQRALGKVK LFDC+ FEFDW+LDPF
Subjt:  KDQ------------ISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF

SwissProt top hitse value%identityAlignment
B2WM34 Structure-specific endonuclease subunit slx15.0e-0438.81Show/hide
Query:  PKPKQWCVYLIISSNSPSKPIWALV----QLKQHNGEIKGGAKAT--QAGRPWICACTIHGFKDQIS
        P P  +C YL+ S N  +  I +      +L QHNG  KGGAK T  Q  RPW   C + GF  + +
Subjt:  PKPKQWCVYLIISSNSPSKPIWALV----QLKQHNGEIKGGAKAT--QAGRPWICACTIHGFKDQIS

B6JY16 Structure-specific endonuclease subunit slx12.0e-0841.94Show/hide
Query:  WCVYLIISSNSPSKPIW------ALVQLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQIS
        +C YL++S  + S+ ++         +L+QHNGEIKGGA  T+  RPW  AC +HGF  +I+
Subjt:  WCVYLIISSNSPSKPIW------ALVQLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQIS

Q0UAL6 Structure-specific endonuclease subunit SLX11.3e-0439.73Show/hide
Query:  VKLE-EPKPKQWCVYLIISSNSPSKPIWALV----QLKQHNGEIKGGAKAT--QAGRPWICACTIHGFKDQIS
        +K+E  P P  +C YL+ S N  S  I +      +L QHNG  KGGAK T  Q  RPW   C + GF  + +
Subjt:  VKLE-EPKPKQWCVYLIISSNSPSKPIWALV----QLKQHNGEIKGGAKAT--QAGRPWICACTIHGFKDQIS

Q5CT62 Structure-specific endonuclease subunit SLX1 homolog1.7e-0436.67Show/hide
Query:  WCVYLIISSNSPSKPIWALV----QLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQIS
        +C +L+  +   +  I   V    +L+QHNGEIK GAK T++G PW     + GF D+++
Subjt:  WCVYLIISSNSPSKPIWALV----QLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQIS

Q9P7M3 Structure-specific endonuclease subunit slx13.1e-0638.1Show/hide
Query:  WCVYLIISSNSPSKPIWAL-------VQLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQIS
        +C YL+ S+ + S     +        +L+QHNGEI GGA  T+ GRPW  +C ++GF +++S
Subjt:  WCVYLIISSNSPSKPIWAL-------VQLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQIS

Arabidopsis top hitse value%identityAlignment
AT5G43210.1 Excinuclease ABC, C subunit, N-terminal3.6e-2641.62Show/hide
Query:  RLLSQTFRCQKPPISNPRLP-----KSSSSSTKGPTLIVKLEE---PKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWIC
        RLLS+TF   K   SNP+ P     K+S +    P+     E    PK K W VYLI+S+  P K    +      +LKQHNGEI+GGAKA+ AGRPW+C
Subjt:  RLLSQTFRCQKPPISNPRLP-----KSSSSSTKGPTLIVKLEE---PKPKQWCVYLIISSNSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWIC

Query:  ACTIHGFK------------DQISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKL
        AC I GF                +RK+   KK++D+     +Q+  LL+HR+RAL KV+   DCS+ E DWK+
Subjt:  ACTIHGFK------------DQISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACTGCTCTCTCAAACATTTCGTTGCCAAAAACCCCCTATTTCAAATCCACGACTACCCAAATCTTCTTCTTCCTCAACCAAGGGTCCAACACTGATCGTTAAATT
GGAGGAGCCGAAGCCTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCCCCATCAAAACCTATTTGGGCTCTTGTACAGTTGAAACAGCATAATGGTGAAATAA
AAGGTGGTGCAAAAGCAACTCAAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAATTTCAAGGAAAATATCGTATGAGAAGAAGGAGGAT
GATGTGGGAAAGCAATTAGATAATCAAACATTAAGATTACTCAAGCACAGGCAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCATTTTGAGTTTGATTG
GAAATTAGATCCTTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGACTGCTCTCTCAAACATTTCGTTGCCAAAAACCCCCTATTTCAAATCCACGACTACCCAAATCTTCTTCTTCCTCAACCAAGGGTCCAACACTGATCGTTAAATT
GGAGGAGCCGAAGCCTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCCCCATCAAAACCTATTTGGGCTCTTGTACAGTTGAAACAGCATAATGGTGAAATAA
AAGGTGGTGCAAAAGCAACTCAAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAATTTCAAGGAAAATATCGTATGAGAAGAAGGAGGAT
GATGTGGGAAAGCAATTAGATAATCAAACATTAAGATTACTCAAGCACAGGCAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCATTTTGAGTTTGATTG
GAAATTAGATCCTTTCTGA
Protein sequenceShow/hide protein sequence
MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPIWALVQLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQISRKISYEKKED
DVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF