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IVF0011551 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011551
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr08:13195293..13195733
RNA-Seq ExpressionIVF0011551
SyntenyIVF0011551
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033202.1 gag/pol protein [Cucumis melo var. makuwa]1.96e-5798Show/hide
Query:  MVGRAHGTKKKGDRRRAAAGCLYVGNVRLTTYGAETEVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDGKRRRGEGDGGVRTRSV
        MVGRAHGTKKKGDRRRAAAGCLYVGNVRLTTYGAETEVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDGKRRRGEGDGGVRTR +
Subjt:  MVGRAHGTKKKGDRRRAAAGCLYVGNVRLTTYGAETEVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDGKRRRGEGDGGVRTRSV
KAA0048089.1 pol protein [Cucumis melo var. makuwa]2.18e-1863.75Show/hide
Query:  TKKKGDRRR--AAAGCLYVGNVRLTTYGAETEVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDGK
        T  +G+ R   A AGCL V  VRLT Y +ETEV+CVAE D   Y GA+ KFG REDST TV+RRRRL+ARFRRE R DGK
Subjt:  TKKKGDRRR--AAAGCLYVGNVRLTTYGAETEVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDGK
TYK17673.1 pol protein [Cucumis melo var. makuwa]1.13e-1168.52Show/hide
Query:  YGAETEVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDGK
        Y +ETEV+CVAE D T Y GA+ KFG REDST TV+R RRL+ RFRRE R DGK
Subjt:  YGAETEVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDGK
TrEMBL top hitse value%identityAlignment
A0A5A7SPT6 Gag/pol protein2.9e-4476.09Show/hide
Query:  MVGRAHGTKKKGDRRRAAAGCLYVGNVRLTTYGAETEVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDGKRRRGEGDGGVRTRSV
        MVGRAHGTKKKGDRRRAAAGCLYVGNVRLTTYGAETEVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDGKRRRGEGDGGVRTR +
Subjt:  MVGRAHGTKKKGDRRRAAAGCLYVGNVRLTTYGAETEVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDGKRRRGEGDGGVRTRSV

Query:  ERRRRAVVLALLGKKEEIWGGGYSEEENEEEEEEEKSR
           R          + E+      + EN+E+++EE+ +
Subjt:  ERRRRAVVLALLGKKEEIWGGGYSEEENEEEEEEEKSR
A0A5A7U3Q7 Pol protein1.5e-1347.33Show/hide
Query:  TKKKGDRRR--AAAGCLYVGNVRLTTYGAETEVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDGKRRRGEGDGGVRTRSVERRRR
        T  +G+ R   A AGCL V  VRLT Y +ETEV+CVAE D   Y GA+ KFG REDST TV+RRRRL+ARFRRE R DGK               E +++
Subjt:  TKKKGDRRR--AAAGCLYVGNVRLTTYGAETEVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDGKRRRGEGDGGVRTRSVERRRR

Query:  AVVLALLGKKEEIWGGGYSEEENEEEEEEEK
         + +   G  +   G   S   N EEEEE+K
Subjt:  AVVLALLGKKEEIWGGGYSEEENEEEEEEEK
A0A5D3D0G0 Pol protein4.3e-0846.36Show/hide
Query:  YGAETEVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDGKRRRGEGDGGVRTRSVERRRRAVVLALLGKKEEIWGGGYSEEENEEE
        Y +ETEV+CVAE D T Y GA+ KFG REDST TV+R RRL+ RFRRE R DGK    + +   +   VER+R        G +     GG      EEE
Subjt:  YGAETEVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDGKRRRGEGDGGVRTRSVERRRRAVVLALLGKKEEIWGGGYSEEENEEE

Query:  EEEEKSRGGG
        EE++  R  G
Subjt:  EEEEKSRGGG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGCCGTGCGCATGGAACGAAGAAGAAGGGCGATCGGAGACGGGCTGCCGCTGGATGTCTTTACGTTGGTAATGTGCGGCTGACGACGTATGGAGCAGAGACGGA
GGTTGAATGTGTAGCTGAGGCAGATACGACGATGTACGAAGGAGCGATATTGAAGTTTGGCTGTCGCGAGGACTCGACGGCAACGGTCAACCGAAGACGCCGATTGCAGG
CGAGGTTTCGACGTGAAGCACGACTCGACGGAAAAAGAAGACGAGGAGAAGGAGACGGAGGCGTGCGAACACGGTCGGTTGAACGAAGAAGAAGGGCGGTTGTGCTGGCG
CTGTTGGGTAAGAAGGAGGAGATTTGGGGCGGCGGCTATTCGGAAGAAGAAAATGAAGAAGAAGAAGAAGAAGAAAAATCAAGGGGGGGAGGCAGCGCGCGCGGGAGTTA
G
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGCCGTGCGCATGGAACGAAGAAGAAGGGCGATCGGAGACGGGCTGCCGCTGGATGTCTTTACGTTGGTAATGTGCGGCTGACGACGTATGGAGCAGAGACGGA
GGTTGAATGTGTAGCTGAGGCAGATACGACGATGTACGAAGGAGCGATATTGAAGTTTGGCTGTCGCGAGGACTCGACGGCAACGGTCAACCGAAGACGCCGATTGCAGG
CGAGGTTTCGACGTGAAGCACGACTCGACGGAAAAAGAAGACGAGGAGAAGGAGACGGAGGCGTGCGAACACGGTCGGTTGAACGAAGAAGAAGGGCGGTTGTGCTGGCG
CTGTTGGGTAAGAAGGAGGAGATTTGGGGCGGCGGCTATTCGGAAGAAGAAAATGAAGAAGAAGAAGAAGAAGAAAAATCAAGGGGGGGAGGCAGCGCGCGCGGGAGTTA
G
Protein sequenceShow/hide protein sequence
MVGRAHGTKKKGDRRRAAAGCLYVGNVRLTTYGAETEVECVAEADTTMYEGAILKFGCREDSTATVNRRRRLQARFRREARLDGKRRRGEGDGGVRTRSVERRRRAVVLA
LLGKKEEIWGGGYSEEENEEEEEEEKSRGGGSARGS