CuGenDBv2

Gene ID	IVF0011564
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposable element Tf2
Genome location	chr06:14799969..14800292
RNA-Seq Expression	IVF0011564
Synteny	IVF0011564
Gene Ontology terms	GO:1901800 - positive regulation of proteasomal protein catabolic process (biological process) GO:0000502 - proteasome complex (cellular component) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0036402 - proteasome-activating ATPase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0038028.1 polyprotein [Cucumis melo var. makuwa]

8.60e-43

75.47

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Query:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM
        MSA+NYAMDLQFEQVSR RQGS+ RTL+IQ  SSSLPP PST LL P    +PNKRAAS  AS SRS I RNPSS+SQ+VRPK+FQPRPPI GYFTKT M
Subjt:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM

Query:  VDLTIK
        VDLTI+
Subjt:  VDLTIK

KAA0054116.1 polyprotein [Cucumis melo var. makuwa]

7.70e-45

76.42

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Query:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM
        MSA+NYAMDLQFEQVSR RQGS+ RTL+IQ  SSSLPP PST LLHP    +PNKRAAS  AS SRS ILRNPSS+SQ+ RPKVFQPRP I GYFTKT+M
Subjt:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM

Query:  VDLTIK
        VDLTI+
Subjt:  VDLTIK

KAA0058438.1 polyprotein [Cucumis melo var. makuwa]

1.22e-42

74.53

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Query:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM
        MSA+NYAMDLQFEQVSR RQG + RTL+IQ  SSSLPP PST LLHP    +PNK  AS  AS SRS I RNPSS+SQ+VRPKVFQPRPPI GYFTKT M
Subjt:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM

Query:  VDLTIK
        VDLTI+
Subjt:  VDLTIK

KAA0066358.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

2.75e-44

76.42

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Query:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM
        MSA NYAMDLQFEQVSR RQGS+ RTL++Q  SSSLPP PST LL P    +PNKRAAS VAS SRS I RNPSS+SQ+VRPKVFQPRPPI GYFTKT M
Subjt:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM

Query:  VDLTIK
        VDLTI+
Subjt:  VDLTIK

TYJ98086.1 hypothetical protein E5676_scaffold565G00190 [Cucumis melo var. makuwa]

9.40e-45

75.47

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Query:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM
        MSA+NYAMDLQFEQVSR RQGS+ RTL+IQ  SSSLPP PST LL P    +PNKRAAS  AS SRS I RNPSS+SQ+VRPK+FQPRPPI GYFTKT M
Subjt:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM

Query:  VDLTIK
        VDLTI+
Subjt:  VDLTIK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T991 26S proteasome regulatory subunit 4-like protein B-like

7.5e-34

75.47

Show/hide

Query:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM
        MSA+NYAMDLQFEQVSR RQGS+ RTL+IQ  SSSLPP PST LL P    +PNKRAAS  AS SRS I RNPSS+SQ+VRPK+FQPRPPI GYFTKT M
Subjt:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM

Query:  VDLTIK
        VDLTI+
Subjt:  VDLTIK

A0A5A7UVN1 Retrotransposable element Tf2

7.5e-34

75.47

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Query:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM
        MSA+NYAMDLQFEQVSR RQGS+ RTL+IQ  SSSLPP PST LL P    +PNKRAAS  AS SRS I RNPSS+SQ+VRPK+FQPRPPI GYFTKT M
Subjt:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM

Query:  VDLTIK
        VDLTI+
Subjt:  VDLTIK

A0A5A7V6D1 Retrotransposable element Tf2

7.5e-34

75.47

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Query:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM
        MSA+NYAMDLQFEQVSR RQGS+ RTL+IQ  SSSLPP PST LL P    +PNKRAAS  AS SRS I RNPSS+SQ+VRPK+FQPRPPI GYFTKT M
Subjt:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM

Query:  VDLTIK
        VDLTI+
Subjt:  VDLTIK

A0A5A7VF67 Retrotransposable element Tf2

4.4e-34

76.42

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Query:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM
        MSA NYAMDLQFEQVSR RQGS+ RTL++Q  SSSLPP PST LL P    +PNKRAAS VAS SRS I RNPSS+SQ+VRPKVFQPRPPI GYFTKT M
Subjt:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM

Query:  VDLTIK
        VDLTI+
Subjt:  VDLTIK

A0A5D3E0H8 Polyprotein

5.7e-34

76.42

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Query:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM
        MSA+NYAMDLQFEQVSR RQGS+ RTL+IQ  SSSLPP PST LLHP    +PNKRAAS  AS SRS ILRNPSS+SQ+ RPKVFQPRP I GYFTKT+M
Subjt:  MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIM

Query:  VDLTIK
        VDLTI+
Subjt:  VDLTIK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGTGCAGATAACTATGCCATGGACCTGCAATTTGAACAAGTGTCTAGGTGTCGACAGGGTTCTTCTCTAAGAACTTTGTCAATTCAACCAGGCTCTTCTAGCCTTCC
TCCTTTTCCCTCAACAACACTGTTACACCCTTTTAGCGTTATATCTCCAAACAAGCGTGCTGCTTCTCTAGTCGCTTCCTTTTCAAGATCTCCAATTCTGAGAAACCCTT
CTTCTTTCTCTCAAGTAGTTAGGCCAAAAGTTTTTCAGCCCAGACCTCCTATCAAAGGTTATTTCACCAAGACAATAATGGTGGATTTAACCATTAAAACATAA

mRNA sequence

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Protein sequence

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MSADNYAMDLQFEQVSRCRQGSSLRTLSIQPGSSSLPPFPSTTLLHPFSVISPNKRAASLVASFSRSPILRNPSSFSQVVRPKVFQPRPPIKGYFTKTIMVDLTIKT

IVF0011564 (gene) of Melon (IVF77) v1 genome