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IVF0011577 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011577
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionpre-mRNA-splicing factor CWC22 homolog isoform X2
Genome locationchr12:11959642..11962479
RNA-Seq ExpressionIVF0011577
SyntenyIVF0011577
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0006417 - regulation of translation (biological process)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025364.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.36e-2189.29Show/hide
Query:  VGGEMKFVLSSHLDFPTESRQMDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQ
        VGGE KFVLSSHLDFPTESRQ+D KYSRESSDED VKGNRRTS+DN RQDRDKRHQ
Subjt:  VGGEMKFVLSSHLDFPTESRQMDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQ
KAA0041393.1 pre-mRNA-splicing factor CWC22-like protein isoform X1 [Cucumis melo var. makuwa]2.16e-1485.71Show/hide
Query:  MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK
        MDRKYSRESSDED  KGNRR SRDNDRQDRD+RHQ KNLHREVERG  K
Subjt:  MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK
TYJ96154.1 pre-mRNA-splicing factor CWC22-like protein isoform X2 [Cucumis melo var. makuwa]2.16e-1485.71Show/hide
Query:  MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK
        MDRKYSRESSDED  KGNRR SRDNDRQDRD+RHQ KNLHREVERG  K
Subjt:  MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK
XP_004142129.1 pre-mRNA-splicing factor CWC22 homolog [Cucumis sativus]5.18e-1691.84Show/hide
Query:  MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK
        MDRKYSRESSDED VKGNRRTSRDNDRQDRDKRHQ KNLHREVERG  K
Subjt:  MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK
XP_008449736.1 PREDICTED: pre-mRNA-splicing factor CWC22 homolog isoform X2 [Cucumis melo]2.18e-1485.71Show/hide
Query:  MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK
        MDRKYSRESSDED  KGNRR SRDNDRQDRD+RHQ KNLHREVERG  K
Subjt:  MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK
TrEMBL top hitse value%identityAlignment
A0A0A0L1Y4 MI domain-containing protein7.5e-1391.84Show/hide
Query:  MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK
        MDRKYSRESSDED VKGNRRTSRDNDRQDRDKRHQ KNLHREVERG  K
Subjt:  MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK
A0A1S3BNN3 pre-mRNA-splicing factor CWC22 homolog isoform X21.8e-1185.71Show/hide
Query:  MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK
        MDRKYSRESSDED  KGNRR SRDNDRQDRD+RHQ KNLHREVERG  K
Subjt:  MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK
A0A5A7SI96 Putative Retrotransposon protein3.2e-1689.29Show/hide
Query:  VGGEMKFVLSSHLDFPTESRQMDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQ
        VGGE KFVLSSHLDFPTESRQ+D KYSRESSDED VKGNRRTS+DN RQDRDKRHQ
Subjt:  VGGEMKFVLSSHLDFPTESRQMDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQ
A0A5A7TE12 Pre-mRNA-splicing factor CWC22-like protein isoform X11.8e-1185.71Show/hide
Query:  MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK
        MDRKYSRESSDED  KGNRR SRDNDRQDRD+RHQ KNLHREVERG  K
Subjt:  MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK
A0A5D3BB30 Pre-mRNA-splicing factor CWC22-like protein isoform X21.8e-1185.71Show/hide
Query:  MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK
        MDRKYSRESSDED  KGNRR SRDNDRQDRD+RHQ KNLHREVERG  K
Subjt:  MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTATGCTTGATGATGTTGGTGGTGAAATGAAATTTGTGCTTTCAAGCCATTTAGATTTTCCTACAGAGAGTCGTCAGATGGATAGGAAGTATAGCCGAGAATCGTC
AGATGAGGATGGAGTGAAAGGTAACAGGAGAACAAGCAGAGATAATGACAGACAAGATAGAGACAAAAGACATCAGGGCAAAAATTTGCACAGAGAAGTAGAGAGGGGAA
AATCTAAATGGAGATTCATGATTAGAATTAAATAA
mRNA sequenceShow/hide mRNA sequence
CCCTTATCCAAATTTTCCAAAATTTTCTTTTTCCCCTGATTTCTTAAAAAAACTCTAACTTTTGCCCTTTCTTCCCCGATTTTCTCCAATAGTTCCGTTCGTGCGCCGCT
CCGTCTCACGATTTGCTCTGCTTTCGTCAAATTGTCTGTTCGTCCATTCGTCCATTCGTCCATTCGTCCATCGCTTCATTTCCTCCACAGCCACCGCGCACGGCTGAGGA
CAGTCACGTCAAACCATCCATTCATTTTCACCACAGTCACCGTCCATTCATCCATTCGTTTCCTCCACGAAGCTCTTGTATCCCTGGGTTTTGTGAAATTTCAAATTCTT
GTGCTTGCTTATACTGGAATGGGATGGGTATAAGGAACTACGGAAATGTTGCTACTCTCCTTCACTAACATATGTGTATGCTTGATGATGTTGGTGGTGAAATGAAATTT
GTGCTTTCAAGCCATTTAGATTTTCCTACAGAGAGTCGTCAGATGGATAGGAAGTATAGCCGAGAATCGTCAGATGAGGATGGAGTGAAAGGTAACAGGAGAACAAGCAG
AGATAATGACAGACAAGATAGAGACAAAAGACATCAGGGCAAAAATTTGCACAGAGAAGTAGAGAGGGGAAAATCTAAATGGAGATTCATGATTAGAATTAAATAATTTG
CGTGAGTCGTCCAACGCTGTAAAGCTGGTGTGAGATTTTCTTCTTAATTTTGGTGTCTATTATGCAACTAGAGCTCTCTTGGACTTACATTTGAGTGGAGGTTGTTGCTT
CAAGAATTATTCGGTGAAACTTATTGGAAAGCTTCGTGAAGTATTTAACACTCGAAAAGACGAAATTATTGAGGGTCGAAACATAATTTTAATGTTTAATAGTCCTATAG
TTAGTTATTTTATTTATCTTTATAAATTGAGCGTAGTTTGTGGAGAGACATTAATAGCCATACTATTCTTATTCTCTTACGGGTGGTTTGAATTAGTTAATTGTTATGTT
TATTGAAAATTGAGTTGTCGTGTATATAAATATTATATTAATTAGACATAGAGCTAAGTAGAACAATTTCTTCCTATGATAGAAGTTTGGGCTATTGTAAGTTGTAATGC
CATTGGATTACTTGACAGCTATAATTAATTTGAGTTGATGGGAATATAATTAGTTCTTTGATAGAAA
Protein sequenceShow/hide protein sequence
MCMLDDVGGEMKFVLSSHLDFPTESRQMDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSKWRFMIRIK