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IVF0011585 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011585
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionMediator of RNA polymerase II transcription subunit 21
Genome locationchr05:117596..120157
RNA-Seq ExpressionIVF0011585
SyntenyIVF0011585
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0050832 - defense response to fungus (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0043078 - polar nucleus (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR021384 - Mediator complex, subunit Med21
IPR037212 - Mediator complex, subunit Med7/Med21-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK21740.1 mediator of RNA polymerase II transcription subunit 21 [Cucumis melo var. makuwa]2.58e-85100Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
XP_004149640.1 mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus]8.64e-8498.55Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAE+ELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
XP_008449895.1 PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo]2.12e-8499.28Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
XP_038893979.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]9.69e-8194.93Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPPS EPTED A IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
         VGQELQKQLQAAE+EL+QVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
XP_038902781.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]1.18e-8195.65Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN+IAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED A IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
         VGQELQKQLQAAE+EL+QVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
TrEMBL top hitse value%identityAlignment
A0A0A0KZ00 Mediator of RNA polymerase II transcription subunit 211.2e-6398.55Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAE+ELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
A0A1S3BN38 Mediator of RNA polymerase II transcription subunit 214.0e-6499.28Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
A0A5A7TEZ9 Mediator of RNA polymerase II transcription subunit 214.0e-6499.28Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
A0A5D3DEB7 Mediator of RNA polymerase II transcription subunit 218.1e-65100Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
A0A6J1DHM9 Mediator of RNA polymerase II transcription subunit 213.5e-6094.2Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPPSQEPTED A IAEQPKLMSAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
         VGQELQKQL+AAE+EL QVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
SwissProt top hitse value%identityAlignment
C0LU16 Mediator of RNA polymerase II transcription subunit 211.9e-5078.42Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGAT-IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN
        MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D AT   EQPK +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ EN
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGAT-IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN

Query:  DVVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
        D+VGQELQKQL+AAE+EL QVQELF Q ADNCLN+KK +
Subjt:  DVVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
Arabidopsis top hitse value%identityAlignment
AT4G04780.1 mediator 211.3e-5178.42Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGAT-IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN
        MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D AT   EQPK +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ EN
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGAT-IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN

Query:  DVVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD
        D+VGQELQKQL+AAE+EL QVQELF Q ADNCLN+KK +
Subjt:  DVVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGAACATTGCAGAGAGACGCTCCTCCAGTTCGTTTATCCCCTAA
TTACCCCGAACCACCGTCTCAGGAGCCTACAGAGGATGGTGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCCAAGCAGTTTGATGCAC
TGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAATTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAGCAGCTA
CAAGCAGCAGAGCAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTAGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGA
mRNA sequenceShow/hide mRNA sequence
CCAATTTTAGAAAAAAGAAATTTTGGAAGCAGCTAAAAGATGACAATAACTATTCAGCATCCACTTGTGACTGATGTTCTAAAACTAAAATATTAGGAAGGTATAAGGAA
AAGGACAGAAAAGAAGGAACCCTAATTCATCTGCTTCTTCTCCGTCTCACGTTCAACCGCCCAGCCCCTCCCTTGCCTCTCCGGTAGTATCTCGATGACAGTCCTTTGAG
ATTAACGGCGGATCGTACTCTCACTCACTCAGTTTCTGGAAGTGATTTGCTGATTAAACGGAGCAATATGTGTATTATTTGCGGAATCATCTTCTGAATTCTTCCTAGGG
ATAAGGTTGAAGATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGAACATTGCAGAGAGACGCTCCTCCAGTTCG
TTTATCCCCTAATTACCCCGAACCACCGTCTCAGGAGCCTACAGAGGATGGTGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCCAAGC
AGTTTGATGCACTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAATTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTT
CAAAAGCAGCTACAAGCAGCAGAGCAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTAGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGAAAGAGTGGGGG
AACTTTCCTATGCTACCAATGTATGGAAACTTTCCGCCTTCATTTCTGCCACATGACTCTTTGTTTTTATATTACATATATGTAGAAATATACGTGATTCTACAGTTTAT
GGAAGAAAAATAATTTTGTCCATTGTATTAATTTTTTTACTGACT
Protein sequenceShow/hide protein sequence
MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQL
QAAEQELVQVQELFSQVADNCLNLKKAD