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IVF0011602 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011602
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCHD3-type chromatin-remodeling factor PICKLE
Genome locationchr10:6049681..6050306
RNA-Seq ExpressionIVF0011602
SyntenyIVF0011602
Gene Ontology termsGO:0005506 - iron ion binding (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR038718 - SNF2-like, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064594.1 CHD3-type chromatin-remodeling factor PICKLE [Cucumis melo var. makuwa]1.42e-3697.22Show/hide
Query:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        VMYVGT QARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSL+
Subjt:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV

XP_016901296.1 PREDICTED: CHD3-type chromatin-remodeling factor PICKLE [Cucumis melo]1.42e-3697.22Show/hide
Query:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        VMYVGT QARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSL+
Subjt:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV

XP_031739900.1 CHD3-type chromatin-remodeling factor PICKLE [Cucumis sativus]1.42e-3697.22Show/hide
Query:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        VMYVGT QARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSL+
Subjt:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV

XP_038897754.1 CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Benincasa hispida]5.16e-3490.28Show/hide
Query:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        VMYVGT QAR VIREYEFYFP+NHKKVKKKKSGQIV+ESKQDRIKFDVLLTSYEMINFDVG LKPIKW+SL+
Subjt:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV

XP_038897755.1 CHD3-type chromatin-remodeling factor PICKLE isoform X2 [Benincasa hispida]5.13e-3490.28Show/hide
Query:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        VMYVGT QAR VIREYEFYFP+NHKKVKKKKSGQIV+ESKQDRIKFDVLLTSYEMINFDVG LKPIKW+SL+
Subjt:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV

TrEMBL top hitse value%identityAlignment
A0A0A0L332 Uncharacterized protein6.2e-3197.22Show/hide
Query:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        VMYVGT QARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSL+
Subjt:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV

A0A1S4DZ79 CHD3-type chromatin-remodeling factor PICKLE6.2e-3197.22Show/hide
Query:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        VMYVGT QARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSL+
Subjt:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV

A0A5A7VBI4 CHD3-type chromatin-remodeling factor PICKLE6.2e-3197.22Show/hide
Query:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        VMYVGT QARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSL+
Subjt:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV

A0A6J1C6Q2 CHD3-type chromatin-remodeling factor PICKLE1.9e-2790.28Show/hide
Query:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        VMYVG+ QAR VIREYEFYFPKNHKKVKKKKSGQIV ESKQDRIKFDVLLTSYEMINFDV TLK IKWQSL+
Subjt:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV

A0A6J1IVQ1 CHD3-type chromatin-remodeling factor PICKLE4.2e-2786.11Show/hide
Query:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        VMYVG+ QAR VIREYEF+FPKNHKKVKKKKSG I++ESKQDRIKFDVLLTSYEMINFDV TLKPI+WQSL+
Subjt:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV

SwissProt top hitse value%identityAlignment
A2A8L1 Chromodomain-helicase-DNA-binding protein 52.3e-0644Show/hide
Query:  FLGVMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        F  V Y G  ++R+VIRE EF F  N  +  KK    +    K+ +IKF VLLTSYE+I  D   L  I+W  LV
Subjt:  FLGVMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV

D3ZD32 Chromodomain-helicase-DNA-binding protein 52.3e-0644Show/hide
Query:  FLGVMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        F  V Y G  ++R+VIRE EF F  N  +  KK    +    K+ +IKF VLLTSYE+I  D   L  I+W  LV
Subjt:  FLGVMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV

F4JTF6 CHD3-type chromatin-remodeling factor CHR71.0e-0640.28Show/hide
Query:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        VMY G  +AR VI E+EFYF +  K                   KFDVLLT+YEM++  +  L PIKW  ++
Subjt:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV

Q8TDI0 Chromodomain-helicase-DNA-binding protein 51.8e-0644Show/hide
Query:  FLGVMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        F  V Y G  ++R+VIRE EF F  N  +  KK    +    K+ +IKF VLLTSYE+I  D   L  I+W  LV
Subjt:  FLGVMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV

Q9S775 CHD3-type chromatin-remodeling factor PICKLE3.5e-2373.61Show/hide
Query:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        VMY GT QAR VIRE+EFY  K+ KK+KKKKSGQI SESKQ RIKFDVLLTSYEMIN D   LKPIKW+ ++
Subjt:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV

Arabidopsis top hitse value%identityAlignment
AT2G13370.1 chromatin remodeling 57.6e-0539.71Show/hide
Query:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKW
        ++YVGT  +R V ++YEFY   N KKV +              IKF+ LLT+YE++  D   L  IKW
Subjt:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKW

AT2G25170.1 chromatin remodeling factor CHD3 (PICKLE)2.5e-2473.61Show/hide
Query:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        VMY GT QAR VIRE+EFY  K+ KK+KKKKSGQI SESKQ RIKFDVLLTSYEMIN D   LKPIKW+ ++
Subjt:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV

AT4G31900.1 chromatin remodeling factor, putative7.3e-0840.28Show/hide
Query:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        VMY G  +AR VI E+EFYF +  K                   KFDVLLT+YEM++  +  L PIKW  ++
Subjt:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV

AT4G31900.2 chromatin remodeling factor, putative7.3e-0840.28Show/hide
Query:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        VMY G  +AR VI E+EFYF +  K                   KFDVLLT+YEM++  +  L PIKW  ++
Subjt:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV

AT5G44800.1 chromatin remodeling 42.2e-0434.72Show/hide
Query:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV
        V Y G+ + R +IR+YE++   +    KK  S            KF+VLLT+YEM+  D   L+ + W+ LV
Subjt:  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATCGAGCAACAATCCTGAGGAAGATTATGTTGCCATTCGACCTGAATGGATCGCGGGCGACAGTGGACCGGATTCTTGCTTGCAGATTTATTATTTTCTTGGAGT
TATGTACGTGGGCACTGTACAAGCCCGTACGGTTATAAGGGAATATGAATTTTACTTTCCAAAGAATCATAAGAAGGTGAAGAAAAAGAAATCTGGCCAAATTGTTAGTG
AAAGTAAGCAAGATAGAATCAAGTTTGATGTTCTGCTAACATCATATGAGATGATTAACTTTGATGTAGGAACACTGAAGCCTATAAAATGGCAATCTCTGGTGAGAGTC
TGCCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCATCGAGCAACAATCCTGAGGAAGATTATGTTGCCATTCGACCTGAATGGATCGCGGGCGACAGTGGACCGGATTCTTGCTTGCAGATTTATTATTTTCTTGGAGT
TATGTACGTGGGCACTGTACAAGCCCGTACGGTTATAAGGGAATATGAATTTTACTTTCCAAAGAATCATAAGAAGGTGAAGAAAAAGAAATCTGGCCAAATTGTTAGTG
AAAGTAAGCAAGATAGAATCAAGTTTGATGTTCTGCTAACATCATATGAGATGATTAACTTTGATGTAGGAACACTGAAGCCTATAAAATGGCAATCTCTGGTGAGAGTC
TGCCATTAG
Protein sequenceShow/hide protein sequence
MSSSNNPEEDYVAIRPEWIAGDSGPDSCLQIYYFLGVMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLVRV
CH