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IVF0011604 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011604
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr06:2392994..2393368
RNA-Seq ExpressionIVF0011604
SyntenyIVF0011604
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033940.1 retrotransposon protein [Cucumis melo var. makuwa]1.81e-2775.68Show/hide
Query:  LRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDDA
        LR I EWPKLAMQ+E ATR EVIRQL  I EL+ LD+A C+RKL QNLADMKAFL +PEEMKMDYC +ILQDDA
Subjt:  LRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDDA

KAA0051580.1 retrotransposon protein [Cucumis melo var. makuwa]1.14e-2354.65Show/hide
Query:  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDD
        +++R AIE  N+QL  IAEWP L +QD   TR E++RQL  IPEL+ +DR R +R LM+N+ DMKAFL VP+ MK  YC +ILQ++
Subjt:  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDD

KAA0052025.1 retrotransposon protein [Cucumis melo var. makuwa]2.79e-2355.81Show/hide
Query:  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDD
        NV+R AI+  N+QL  IAEWP L  QD + TR EV+RQL  IPEL+ +DR R +R LM+N+ D+KAFL VP+ MK  YC +ILQ++
Subjt:  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDD

KAA0056591.1 retrotransposon protein [Cucumis melo var. makuwa]8.11e-2668.29Show/hide
Query:  NVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMD
        NVE + VIRDA+ECANDQLR IA+W KLAMQDED TR +VIRQL+ IPELS LDRARC++ +   L +MKAFL + E+MKMD
Subjt:  NVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMD

KAA0058838.1 retrotransposon protein [Cucumis melo var. makuwa]1.08e-75100Show/hide
Query:  MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLAD
        MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLAD
Subjt:  MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLAD

Query:  MKAFLVVPEEMKMDYCKVILQDDA
        MKAFLVVPEEMKMDYCKVILQDDA
Subjt:  MKAFLVVPEEMKMDYCKVILQDDA

TrEMBL top hitse value%identityAlignment
A0A5A7SSK8 Retrotransposon protein1.3e-2162.11Show/hide
Query:  NVEIVNVIRDAIECANDQ---LRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDDA
        N+EI  +    +  +++    LR I EWPKLAMQ+E ATR EVIRQL  I EL+ LD+A C+RKL QNLADMKAFL +PEEMKMDYC +ILQDDA
Subjt:  NVEIVNVIRDAIECANDQ---LRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDDA

A0A5A7U8U9 Retrotransposon protein1.5e-1754.65Show/hide
Query:  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDD
        +++R AIE  N+QL  IAEWP L +QD   TR E++RQL  IPEL+ +DR R +R LM+N+ DMKAFL VP+ MK  YC +ILQ++
Subjt:  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDD

A0A5A7USV9 Retrotransposon protein2.9e-2168.29Show/hide
Query:  NVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMD
        NVE + VIRDA+ECANDQLR IA+W KLAMQDED TR +VIRQL+ IPELS LDRARC++ +   L +MKAFL + E+MKMD
Subjt:  NVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMD

A0A5A7UUF7 Retrotransposon protein5.1e-58100Show/hide
Query:  MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLAD
        MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLAD
Subjt:  MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLAD

Query:  MKAFLVVPEEMKMDYCKVILQDDA
        MKAFLVVPEEMKMDYCKVILQDDA
Subjt:  MKAFLVVPEEMKMDYCKVILQDDA

A0A5A7VC47 Retrotransposon protein1.1e-1755.81Show/hide
Query:  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDD
        +++R AIE  N+QL  IAEWP L  QD   TR E++RQL VIPEL+ +DR R +R LM+N+ DMKAFL VP+ MK  YC +ILQ++
Subjt:  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCAGAAAACATTGTTACAATACTAACCATCTTCACAGTGTTCCAACGTCTGTTAGTGTTATTGATGATGTTGGACAAACTACTAAACGAAAATGTGGAAATTGT
GAATGTCATTCGTGATGCCATAGAATGTGCGAATGACCAATTGAGGACCATTGCAGAGTGGCCAAAGTTAGCTATGCAAGACGAAGACGCAACCCGATTGGAAGTCATTA
GACAGTTGCGGGTTATTCCTGAGCTAAGTGGATTGGATAGGGCACGGTGCCTGAGGAAGCTGATGCAGAACTTGGCCGACATGAAAGCATTCCTGGTCGTACCCGAGGAG
ATGAAGATGGACTACTGTAAGGTCATTCTACAAGATGACGCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCAGAAAACATTGTTACAATACTAACCATCTTCACAGTGTTCCAACGTCTGTTAGTGTTATTGATGATGTTGGACAAACTACTAAACGAAAATGTGGAAATTGT
GAATGTCATTCGTGATGCCATAGAATGTGCGAATGACCAATTGAGGACCATTGCAGAGTGGCCAAAGTTAGCTATGCAAGACGAAGACGCAACCCGATTGGAAGTCATTA
GACAGTTGCGGGTTATTCCTGAGCTAAGTGGATTGGATAGGGCACGGTGCCTGAGGAAGCTGATGCAGAACTTGGCCGACATGAAAGCATTCCTGGTCGTACCCGAGGAG
ATGAAGATGGACTACTGTAAGGTCATTCTACAAGATGACGCGTGA
Protein sequenceShow/hide protein sequence
MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEE
MKMDYCKVILQDDA