CuGenDBv2

Gene ID	IVF0011690
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr08:29323979..29324449
RNA-Seq Expression	IVF0011690
Synteny	IVF0011690
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR025724 - GAG-pre-integrase domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0045141.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.36e-95

100

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Query:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ
        MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ
Subjt:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ

Query:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMK
        GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMK
Subjt:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMK

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

2.50e-84

91.45

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Query:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ
        MVRILTNVRYVPKL RNLISLGELDRSGCTIKSEN VMKVTKGSLVKLRGTLRHGLYVLE T VSGSAAIASGKVT+M MLWHKRLAHVSERGLQALSQQ
Subjt:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ

Query:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMKRL
        GLLGGVKNVEL FCEHCIMGKSTRVKFGKGKHT KGILDY+HSDLWG  K +
Subjt:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMKRL

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

3.26e-85

92.76

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Query:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ
        MVRILTNVRYVPKL RNLISLGELDRSGCTIKSEN VMKVTKGSLVKLRGTLRHGLYVLE T VSGSAAIASGKVTDM MLWHKRLAHVSERGLQALSQQ
Subjt:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ

Query:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMKRL
        GLLGGVKNVEL FCEHCIMGKSTRVKFGKGKHT KGILDYVHSDLWG  K +
Subjt:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMKRL

TYK13826.1 putative polyprotein [Cucumis melo var. makuwa]

1.16e-85

92.76

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Query:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ
        MVRILTNVRYVPKL RNLISLGELDRSGCTIKSEN VMKVTKGSLVKLRGTLRHGLYVLE T VSGSAAIASGKVTDM MLWHKRLAHVSERGLQALSQQ
Subjt:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ

Query:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMKRL
        GLLGGVKNVEL FCEHCIMGKSTRVKFGKGKHT KGILDYVHSDLWG  K +
Subjt:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMKRL

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

4.22e-85

92.76

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Query:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ
        MVRILTNVRYVPKL RNLISLGELDRSGCTIKSEN VMKVTKGSLVKLRGTLRHGLYVLE T VSGSAAIASGKVTDM MLWHKRLAHVSERGLQALSQQ
Subjt:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ

Query:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMKRL
        GLLGGVKNVEL FCEHCIMGKSTRVKFGKGKHT KGILDYVHSDLWG  K +
Subjt:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMKRL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TUE4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.0e-79

100

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Query:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ
        MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ
Subjt:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ

Query:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMK
        GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMK
Subjt:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMK

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

2.7e-72

91.45

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Query:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ
        MVRILTNVRYVPKL RNLISLGELDRSGCTIKSEN VMKVTKGSLVKLRGTLRHGLYVLE T VSGSAAIASGKVT+M MLWHKRLAHVSERGLQALSQQ
Subjt:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ

Query:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMKRL
        GLLGGVKNVEL FCEHCIMGKSTRVKFGKGKHT KGILDY+HSDLWG  K +
Subjt:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMKRL

A0A5A7UB25 Putative gag-pol polyprotein

5.4e-73

92.76

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Query:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ
        MVRILTNVRYVPKL RNLISLGELDRSGCTIKSEN VMKVTKGSLVKLRGTLRHGLYVLE T VSGSAAIASGKVTDM MLWHKRLAHVSERGLQALSQQ
Subjt:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ

Query:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMKRL
        GLLGGVKNVEL FCEHCIMGKSTRVKFGKGKHT KGILDYVHSDLWG  K +
Subjt:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMKRL

A0A5D3CTV2 Putative polyprotein

5.4e-73

92.76

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Query:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ
        MVRILTNVRYVPKL RNLISLGELDRSGCTIKSEN VMKVTKGSLVKLRGTLRHGLYVLE T VSGSAAIASGKVTDM MLWHKRLAHVSERGLQALSQQ
Subjt:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ

Query:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMKRL
        GLLGGVKNVEL FCEHCIMGKSTRVKFGKGKHT KGILDYVHSDLWG  K +
Subjt:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMKRL

A0A5D3DNU1 Putative gag-pol polyprotein

5.4e-73

92.76

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Query:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ
        MVRILTNVRYVPKL RNLISLGELDRSGCTIKSEN VMKVTKGSLVKLRGTLRHGLYVLE T VSGSAAIASGKVTDM MLWHKRLAHVSERGLQALSQQ
Subjt:  MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQ

Query:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMKRL
        GLLGGVKNVEL FCEHCIMGKSTRVKFGKGKHT KGILDYVHSDLWG  K +
Subjt:  GLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMKRL

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.7e-20

38.1

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Query:  ILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQGLL
        +L +VR+VP L  NLIS   LDR G      N+  ++TKGSLV  +G  R  LY        G    A  +++    LWHKR+ H+SE+GLQ L+++ L+
Subjt:  ILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQGLL

Query:  GGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMK
           K   +  C++C+ GK  RV F         ILD V+SD+ G M+
Subjt:  GGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMK

P93293 Uncharacterized mitochondrial protein AtMg00300

1.4e-22

46.85

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Query:  VMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQGLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKG
        V+KV KG    L+G     LY+L+ +  +G + +A     D   LWH RLAH+S+RG++ L ++G L   K   L FCE CI GK+ RV F  G+HT K 
Subjt:  VMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQGLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKG

Query:  ILDYVHSDLWG
         LDYVHSDLWG
Subjt:  ILDYVHSDLWG

Arabidopsis top hits

e value

%identity

Alignment

ATMG00300.1 Gag-Pol-related retrotransposon family protein

1.0e-23

46.85

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Query:  VMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQGLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKG
        V+KV KG    L+G     LY+L+ +  +G + +A     D   LWH RLAH+S+RG++ L ++G L   K   L FCE CI GK+ RV F  G+HT K 
Subjt:  VMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQGLLGGVKNVELSFCEHCIMGKSTRVKFGKGKHTAKG

Query:  ILDYVHSDLWG
         LDYVHSDLWG
Subjt:  ILDYVHSDLWG

Sequences

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CDS sequence

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ATGGTCAGAATACTTACTAATGTGAGGTATGTTCCAAAACTCAATCGTAATCTAATATCCCTCGGTGAATTAGATAGATCAGGTTGTACCATAAAATCTGAAAATAGAGT
TATGAAAGTTACCAAAGGTTCTTTGGTTAAACTGAGGGGAACCTTGAGGCATGGTCTATATGTGTTGGAAGATACTAGAGTTTCAGGTAGTGCTGCTATTGCGTCAGGCA
AAGTTACAGATATGTTTATGTTATGGCATAAAAGGCTAGCTCATGTGAGTGAAAGAGGCTTACAAGCACTTTCTCAACAAGGTTTGCTAGGAGGAGTTAAAAATGTTGAA
CTCTCATTCTGTGAACATTGTATAATGGGAAAGTCTACCAGAGTAAAGTTTGGGAAAGGGAAGCACACAGCCAAAGGTATTTTGGATTATGTTCACTCAGATTTGTGGGG
TCATATGAAGAGGCTTCTATGGGAGGTTTGA

mRNA sequence

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Protein sequence

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MVRILTNVRYVPKLNRNLISLGELDRSGCTIKSENRVMKVTKGSLVKLRGTLRHGLYVLEDTRVSGSAAIASGKVTDMFMLWHKRLAHVSERGLQALSQQGLLGGVKNVE
LSFCEHCIMGKSTRVKFGKGKHTAKGILDYVHSDLWGHMKRLLWEV

IVF0011690 (gene) of Melon (IVF77) v1 genome