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IVF0011738 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011738
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionProtein ROOT HAIR DEFECTIVE 3
Genome locationchr02:9634211..9634708
RNA-Seq ExpressionIVF0011738
SyntenyIVF0011738
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005789 - endoplasmic reticulum membrane (cellular component)
GO:0009536 - plastid (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR008803 - RHD3/Sey1
IPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR030386 - GB1/RHD3-type guanine nucleotide-binding (G) domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2301062.1 hypothetical protein GH714_019756 [Hevea brasiliensis]1.58e-2592.16Show/hide
Query:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        RSQ TKGIWLARCAGI+PCTLVMDLEGTDGRERGEDDTAFEKQS LFAL V
Subjt:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
KAF4373690.1 hypothetical protein G4B88_030033 [Cannabis sativa]3.75e-2488.24Show/hide
Query:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        RSQ TKGIWLA+CAGI+PCTLVMDLEGTDGRERGEDDTAF  QS LFALVV
Subjt:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
KAG2321814.1 hypothetical protein Bca52824_015027 [Brassica carinata]8.66e-2590.2Show/hide
Query:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        RSQ TKGIWLARCAGI+PCTLVMDLEGTDGRERGEDDTAFEKQS LFAL +
Subjt:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
KAG5537881.1 hypothetical protein RHGRI_025094 [Rhododendron griersonianum]2.90e-2487.27Show/hide
Query:  MSLSRSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        +SLSRSQ TKGIW+A CAGI+PCTLVMDLEGTDGRERGEDDTAFEKQS LFAL V
Subjt:  MSLSRSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
MCH81464.1 ROOT HAIR defective 3 GTP-binding family protein [Trifolium medium]9.67e-2588.24Show/hide
Query:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        RSQ TKGIW+ARCAGI+PCT+VMDLEGTDGRERGEDDTAFEKQS LFAL V
Subjt:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
TrEMBL top hitse value%identityAlignment
A0A218WX77 GB1/RHD3-type G domain-containing protein4.6e-1987.27Show/hide
Query:  MSLSRSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        +S  RSQ TKGIWLARCAGI+PCTLVMDLEGTDGRERGEDDTAFEKQS LFAL V
Subjt:  MSLSRSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
A0A6J1HJ25 Protein ROOT HAIR DEFECTIVE 3 homolog4.6e-1988.68Show/hide
Query:  LSRSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        + RSQ TKGIWLARCAGI+PCTLVMDLEGTDGRERGEDDTAFEKQS LFAL V
Subjt:  LSRSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
A0A6J1HND9 Protein ROOT HAIR DEFECTIVE 3 homolog4.6e-1988.68Show/hide
Query:  LSRSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        + RSQ TKGIWLARCAGI+PCTLVMDLEGTDGRERGEDDTAFEKQS LFAL V
Subjt:  LSRSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
A0A6J1KDB3 Protein ROOT HAIR DEFECTIVE 3 homolog4.6e-1988.68Show/hide
Query:  LSRSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        + RSQ TKGIWLARCAGI+PCTLVMDLEGTDGRERGEDDTAFEKQS LFAL V
Subjt:  LSRSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
A0A6J1KMA1 Protein ROOT HAIR DEFECTIVE 3 homolog4.6e-1988.68Show/hide
Query:  LSRSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        + RSQ TKGIWLARCAGI+PCTLVMDLEGTDGRERGEDDTAFEKQS LFAL V
Subjt:  LSRSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
SwissProt top hitse value%identityAlignment
P93042 Protein ROOT HAIR DEFECTIVE 38.0e-2188.24Show/hide
Query:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        RSQ TKGIW+ARCAGI+PCT+VMDLEGTDGRERGEDDTAFEKQS LFAL V
Subjt:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
Q0JLS6 Protein ROOT HAIR DEFECTIVE 32.2e-1882.35Show/hide
Query:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        RSQ TKGIW+A+   I+PCTLVMDLEGTDGRERGEDDTAFEKQS LFAL V
Subjt:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
Q2QMH2 Protein ROOT HAIR DEFECTIVE 3 homolog 13.1e-2082.35Show/hide
Query:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        RSQ TKGIW+ARC G++PCT+VMDLEGTDGRERGEDDTAFEKQS+LFAL +
Subjt:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
Q9FKE9 Protein ROOT HAIR DEFECTIVE 3 homolog 24.9e-1878.43Show/hide
Query:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        RSQ TKGIW+ARC GI+P T+ MDLEGTDGRERGEDDT FEKQS LFA+ V
Subjt:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
Q9SSN0 Protein ROOT HAIR DEFECTIVE 3 homolog 12.8e-2190.2Show/hide
Query:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        RSQ TKGIWLARCAGI+PCTLVMDLEGTDGRERGEDDTAFEKQS LFAL +
Subjt:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
Arabidopsis top hitse value%identityAlignment
AT1G72960.1 Root hair defective 3 GTP-binding protein (RHD3)2.0e-2290.2Show/hide
Query:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        RSQ TKGIWLARCAGI+PCTLVMDLEGTDGRERGEDDTAFEKQS LFAL +
Subjt:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
AT3G13870.1 Root hair defective 3 GTP-binding protein (RHD3)5.7e-2288.24Show/hide
Query:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        RSQ TKGIW+ARCAGI+PCT+VMDLEGTDGRERGEDDTAFEKQS LFAL V
Subjt:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
AT3G13870.2 Root hair defective 3 GTP-binding protein (RHD3)2.2e-2188Show/hide
Query:  SQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        SQ TKGIW+ARCAGI+PCT+VMDLEGTDGRERGEDDTAFEKQS LFAL V
Subjt:  SQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
AT5G45160.1 Root hair defective 3 GTP-binding protein (RHD3)3.5e-1978.43Show/hide
Query:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV
        RSQ TKGIW+ARC GI+P T+ MDLEGTDGRERGEDDT FEKQS LFA+ V
Subjt:  RSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACTTTCTAGATCGCAAATAACTAAAGGTATATGGTTGGCTAGATGCGCCGGCATCAAGCCTTGTACACTTGTGATGGATTTGGAAGGAACTGATGGAAGAGAGCG
AGGAGAGGACGACACTGCATTTGAGAAGCAAAGTACCCTCTTTGCGCTTGTCGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCACTTTCTAGATCGCAAATAACTAAAGGTATATGGTTGGCTAGATGCGCCGGCATCAAGCCTTGTACACTTGTGATGGATTTGGAAGGAACTGATGGAAGAGAGCG
AGGAGAGGACGACACTGCATTTGAGAAGCAAAGTACCCTCTTTGCGCTTGTCGTGTAA
Protein sequenceShow/hide protein sequence
MSLSRSQITKGIWLARCAGIKPCTLVMDLEGTDGRERGEDDTAFEKQSTLFALVV