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IVF0011922 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011922
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr11:16610651..16611227
RNA-Seq ExpressionIVF0011922
SyntenyIVF0011922
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062151.1 retrotransposon protein [Cucumis melo var. makuwa]2.00e-7594.21Show/hide
Query:  EADAARLGSNRRTVWLGSGGPCAHVAWRLLLIERSLTAASDGHVTEGSGPTRLDGTHLALTVKRPWRYRDDGSTTKAKAETHRRLMDARTVRDLTRKGRD
        EADAARLGSNRRTVWLGSGGPCAHVAW+LLLIERSLTA SD HVTEGSGPTRLDGTHLALTVKRPWRYRDDGSTTKAKAETHRRLMDARTV+DLTRKGRD
Subjt:  EADAARLGSNRRTVWLGSGGPCAHVAWRLLLIERSLTAASDGHVTEGSGPTRLDGTHLALTVKRPWRYRDDGSTTKAKAETHRRLMDARTVRDLTRKGRD

Query:  TDEVEHGWLPGIRIDGEEGGS
        TDEVEH WLPG+RIDGEEG S
Subjt:  TDEVEHGWLPGIRIDGEEGGS
TrEMBL top hitse value%identityAlignment
A0A5A7V8Y5 Retrotransposon protein5.0e-6094.21Show/hide
Query:  EADAARLGSNRRTVWLGSGGPCAHVAWRLLLIERSLTAASDGHVTEGSGPTRLDGTHLALTVKRPWRYRDDGSTTKAKAETHRRLMDARTVRDLTRKGRD
        EADAARLGSNRRTVWLGSGGPCAHVAW+LLLIERSLTA SD HVTEGSGPTRLDGTHLALTVKRPWRYRDDGSTTKAKAETHRRLMDARTV+DLTRKGRD
Subjt:  EADAARLGSNRRTVWLGSGGPCAHVAWRLLLIERSLTAASDGHVTEGSGPTRLDGTHLALTVKRPWRYRDDGSTTKAKAETHRRLMDARTVRDLTRKGRD

Query:  TDEVEHGWLPGIRIDGEEGGS
        TDEVEH WLPG+RIDGEEG S
Subjt:  TDEVEHGWLPGIRIDGEEGGS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTAAGGGTCCAAAATTAACATTTGAAGCAGACGCGGCGCGACTCGGATCCAACAGACGCACGGTGTGGCTTGGCTCGGGTGGACCTTGTGCACATGTGGCTTGGCG
ACTGCTCCTAATCGAACGTTCGTTGACGGCAGCGAGCGACGGACACGTGACAGAGGGTAGTGGACCTACGCGGCTCGATGGAACACACTTAGCTTTAACGGTGAAACGAC
CGTGGAGATACCGAGACGACGGATCAACAACGAAGGCAAAGGCGGAGACCCACCGACGCTTGATGGACGCACGAACGGTCAGAGACTTGACGCGAAAGGGAAGAGACACA
GATGAGGTTGAGCATGGCTGGCTGCCGGGGATACGGATCGATGGCGAGGAGGGCGGTTCGGGAGTGGGTTGCGCGGTGCGGTGGCTGACGACTGGAAGAGCGATAGCGGC
AGCGGCGGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTAAGGGTCCAAAATTAACATTTGAAGCAGACGCGGCGCGACTCGGATCCAACAGACGCACGGTGTGGCTTGGCTCGGGTGGACCTTGTGCACATGTGGCTTGGCG
ACTGCTCCTAATCGAACGTTCGTTGACGGCAGCGAGCGACGGACACGTGACAGAGGGTAGTGGACCTACGCGGCTCGATGGAACACACTTAGCTTTAACGGTGAAACGAC
CGTGGAGATACCGAGACGACGGATCAACAACGAAGGCAAAGGCGGAGACCCACCGACGCTTGATGGACGCACGAACGGTCAGAGACTTGACGCGAAAGGGAAGAGACACA
GATGAGGTTGAGCATGGCTGGCTGCCGGGGATACGGATCGATGGCGAGGAGGGCGGTTCGGGAGTGGGTTGCGCGGTGCGGTGGCTGACGACTGGAAGAGCGATAGCGGC
AGCGGCGGCTTAG
Protein sequenceShow/hide protein sequence
MIKGPKLTFEADAARLGSNRRTVWLGSGGPCAHVAWRLLLIERSLTAASDGHVTEGSGPTRLDGTHLALTVKRPWRYRDDGSTTKAKAETHRRLMDARTVRDLTRKGRDT
DEVEHGWLPGIRIDGEEGGSGVGCAVRWLTTGRAIAAAAA