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IVF0011985 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0011985
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSplicing factor YJU2
Genome locationchr08:26255448..26257791
RNA-Seq ExpressionIVF0011985
SyntenyIVF0011985
Gene Ontology termsGO:0000349 - generation of catalytic spliceosome for first transesterification step (biological process)
GO:0071006 - U2-type catalytic step 1 spliceosome (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007590 - Saf4/Yju2 protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032865.1 coiled-coil domain-containing protein 94-like protein [Cucumis melo var. makuwa]1.15e-4345.33Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVIE-----------------------------------
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGN IYKGTKFNSRKEDVI+                                   
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVIE-----------------------------------

Query:  ---------------------------------------------------------------------------LNSYVRRISDDEFDDGSHSVQHLTN
                                                                                    NSYVRRISDDEFDDGSHSVQHLTN
Subjt:  ---------------------------------------------------------------------------LNSYVRRISDDEFDDGSHSVQHLTN

Query:  NDIASDFKAKVIKL
        NDIASDFKAK +++
Subjt:  NDIASDFKAKVIKL

KAA0065558.1 coiled-coil domain-containing protein 94-like protein [Cucumis melo var. makuwa]4.08e-5158.24Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVIE-----------------------------------
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVI+                                   
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVIE-----------------------------------

Query:  -----------------------------------LNSYVRRISDDEFDDGSHSVQHLTNNDIASDFKAK
                                           LNSYVRRISDDEFDDGSHSVQHLTNNDIASDFKAK
Subjt:  -----------------------------------LNSYVRRISDDEFDDGSHSVQHLTNNDIASDFKAK

KAE8637283.1 hypothetical protein CSA_004535 [Cucumis sativus]5.57e-4349.48Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVIE-----------------------------------
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGN IYKGTKFNSRKEDVI+                                   
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVIE-----------------------------------

Query:  ---------------------------------------------------------LNSYVRRISDDEFDDGSHSVQHLTNNDIASDFKAK
                                                                  NSYVRRISDDEFDDGS  VQHLTNNDIASDFKAK
Subjt:  ---------------------------------------------------------LNSYVRRISDDEFDDGSHSVQHLTNNDIASDFKAK

TYK29261.1 coiled-coil domain-containing protein 94-like protein [Cucumis melo var. makuwa]3.73e-5056.25Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVIE-----------------------------------
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVI+                                   
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVIE-----------------------------------

Query:  -----------------------------------------LNSYVRRISDDEFDDGSHSVQHLTNNDIASDFKAK
                                                 LNSYVRRISDDEFDDGSHSVQHLTNNDIASDFKAK
Subjt:  -----------------------------------------LNSYVRRISDDEFDDGSHSVQHLTNNDIASDFKAK

XP_016903347.1 PREDICTED: coiled-coil domain-containing protein 94 homolog, partial [Cucumis melo]1.46e-39100Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVI
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVI
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVI

TrEMBL top hitse value%identityAlignment
A0A0B0MV50 Splicing factor YJU23.0e-2898.44Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVI
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGN IYKGTKFNSRKEDVI
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVI

A0A1S4E548 coiled-coil domain-containing protein 94 homolog1.6e-29100Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVI
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVI
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVI

A0A5A7SUI1 Splicing factor YJU29.8e-3545.33Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVIE-----------------------------------
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGN IYKGTKFNSRKEDVI+                                   
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVIE-----------------------------------

Query:  ---------------------------------------------------------------------------LNSYVRRISDDEFDDGSHSVQHLTN
                                                                                    NSYVRRISDDEFDDGSHSVQHLTN
Subjt:  ---------------------------------------------------------------------------LNSYVRRISDDEFDDGSHSVQHLTN

Query:  NDIASDFKAKVIKL
        NDIASDFKAK +++
Subjt:  NDIASDFKAKVIKL

A0A5A7VD47 Coiled-coil domain-containing protein 94-like protein5.4e-4158.24Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVIE-----------------------------------
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVI+                                   
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVIE-----------------------------------

Query:  -----------------------------------LNSYVRRISDDEFDDGSHSVQHLTNNDIASDFKAK
                                           LNSYVRRISDDEFDDGSHSVQHLTNNDIASDFKAK
Subjt:  -----------------------------------LNSYVRRISDDEFDDGSHSVQHLTNNDIASDFKAK

A0A5D3E0P2 Coiled-coil domain-containing protein 94-like protein2.7e-4056.25Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVIE-----------------------------------
        MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVI+                                   
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVIE-----------------------------------

Query:  -----------------------------------------LNSYVRRISDDEFDDGSHSVQHLTNNDIASDFKAK
                                                 LNSYVRRISDDEFDDGSHSVQHLTNNDIASDFKAK
Subjt:  -----------------------------------------LNSYVRRISDDEFDDGSHSVQHLTNNDIASDFKAK

SwissProt top hitse value%identityAlignment
A8WHR3 Splicing factor YJU21.9e-1966.67Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDV
        M ERKVLNKYYPPDFDPSK+P+++ PK++Q  VR+M P ++RC TCG  IYKG KFN+RKE V
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDV

Q54WR5 Splicing factor YJU28.9e-1763.49Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDV
        MGERKV++KYYPPDFDPSK+ +++  +    KV  MLPMSIRCNTCG  I +GTKFN++KE V
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDV

Q9BW85 Splicing factor YJU21.9e-1966.67Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDV
        M ERKVLNKYYPPDFDPSK+P+++ PK++Q  VR+M P ++RC TCG  IYKG KFN+RKE V
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDV

Q9D6J3 Splicing factor YJU21.9e-1966.67Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDV
        M ERKVLNKYYPPDFDPSK+P+++ PK++Q  VR+M P ++RC TCG  IYKG KFN+RKE V
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDV

Q9P7C5 Splicing factor YJU29.2e-1457.58Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQ-----QMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKE
        M ERKVLNKY PPD+DPS  P  ++ K Q     ++ VR+M P S+RC+TCG  IYKG KFN+RKE
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQ-----QMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKE

Arabidopsis top hitse value%identityAlignment
AT1G17130.1 Family of unknown function (DUF572)4.6e-2989.06Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVI
        MGERKVLNKYYPPDFDP+KL R+RRPKNQQ+KVRMMLPMS+RC TCGN IYKGTKFNSRKEDVI
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVI

AT1G17130.2 Family of unknown function (DUF572)3.6e-2986.57Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVIELN
        MGERKVLNKYYPPDFDP+KL R+RRPKNQQ+KVRMMLPMS+RC TCGN IYKGTKFNSRKEDVI  N
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVIELN

AT2G29430.1 Family of unknown function (DUF572)2.3e-0460Show/hide
Query:  MMLPMSIRCNTCGNCIYKGTKFNSRKEDVI
        + LPM ++CN C N + KGTKF SR EDVI
Subjt:  MMLPMSIRCNTCGNCIYKGTKFNSRKEDVI

AT2G32050.1 Family of unknown function (DUF572)5.5e-2267.19Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVI
        MGERK LNKYYPP+FDP ++PR+R+PKNQQ K+R M+P+ IRCNTCGN + +GTK N R+E+VI
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVI

AT3G43250.1 Family of unknown function (DUF572)3.8e-2370.31Show/hide
Query:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVI
        MGERK LNKYYPPDFDP K+ R+++PKNQQ K+R MLP+ +RCNTCGN + +GTKFN R+EDVI
Subjt:  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGGAAGGTGCTTAACAAATACTACCCACCGGATTTTGATCCGTCAAAGCTACCAAGGGTTCGTAGACCCAAAAACCAGCAAATGAAGGTTCGTATGATGCT
TCCTATGAGCATCCGGTGCAATACTTGTGGTAATTGCATATACAAGGGCACAAAGTTCAATTCTCGCAAGGAGGACGTCATTGAACTCAACAGTTATGTTAGAAGAATTT
CAGATGATGAATTTGATGATGGTAGTCATTCTGTTCAGCATTTGACCAACAATGATATAGCATCGGACTTTAAAGCAAAGGTAATAAAATTGTTGCTGAGAAATGAGGGG
TTCTTATGGGGAGGAAAATCAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGGAAGGTGCTTAACAAATACTACCCACCGGATTTTGATCCGTCAAAGCTACCAAGGGTTCGTAGACCCAAAAACCAGCAAATGAAGGTTCGTATGATGCT
TCCTATGAGCATCCGGTGCAATACTTGTGGTAATTGCATATACAAGGGCACAAAGTTCAATTCTCGCAAGGAGGACGTCATTGAACTCAACAGTTATGTTAGAAGAATTT
CAGATGATGAATTTGATGATGGTAGTCATTCTGTTCAGCATTTGACCAACAATGATATAGCATCGGACTTTAAAGCAAAGGTAATAAAATTGTTGCTGAGAAATGAGGGG
TTCTTATGGGGAGGAAAATCAAGATGA
Protein sequenceShow/hide protein sequence
MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVIELNSYVRRISDDEFDDGSHSVQHLTNNDIASDFKAKVIKLLLRNEG
FLWGGKSR