CuGenDBv2

Gene ID	IVF0012003
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein Ycf2-like
Genome location	chr11:13594902..13602086
RNA-Seq Expression	IVF0012003
Synteny	IVF0012003
Gene Ontology terms	GO:0044260 - cellular macromolecule metabolic process (biological process) GO:0090304 - nucleic acid metabolic process (biological process) GO:0016020 - membrane (cellular component) GO:0004518 - nuclease activity (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039580.1 protein Ycf2-like [Cucumis melo var. makuwa]

1.33e-58

56.94

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Query:  MLATPIEVGISYFAPFLETEKDIYKEAKDELRKTQNSDRVAH-------------------------------------------GARAFEEHLDKVEED
        +LATP EVG+ +F PF+ETEKDI KEA+DELRKT+NSD +A                                            GARAFEEHLDKVEED
Subjt:  MLATPIEVGISYFAPFLETEKDIYKEAKDELRKTQNSDRVAH-------------------------------------------GARAFEEHLDKVEED

Query:  QEEDDIEDLNLGSSNPKVLGKMDNDEDKDGQGLMDESRTQTSRGQDGGQPKMTQSGTQPTTGDKDCLPYKATEETEEEINRLIRSINESVIYDEMKKKED
        QEEDD+EDLNL SSN  VLGK D+DEDKDG+ LMDESR ++SRG DGGQ K+ +S T PT GDK+   YKA EE +EEINRLIRSI+ESVIYDE+KKKE 
Subjt:  QEEDDIEDLNLGSSNPKVLGKMDNDEDKDGQGLMDESRTQTSRGQDGGQPKMTQSGTQPTTGDKDCLPYKATEETEEEINRLIRSINESVIYDEMKKKED

Query:  NREPSHCRL
         R  S C L
Subjt:  NREPSHCRL

KAA0048518.1 protein Ycf2-like [Cucumis melo var. makuwa]

5.38e-64

74.84

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Query:  MLATPIEVGISYFAPFLETEKDIYKEAKDELRKTQNSDRVAHGARAFEEHLDKVEEDQEEDDIEDLNLGSSNPKVLGKMDNDEDKDGQGLMDESRTQTSR
        MLATP EVG+ YFAPF+ETEKDI KEA+DELRKT+NSD +  GA AFEEHLDKVEEDQEEDD+EDLNL SS+  VLGK D+DEDKDG+ L+DESR ++SR
Subjt:  MLATPIEVGISYFAPFLETEKDIYKEAKDELRKTQNSDRVAHGARAFEEHLDKVEEDQEEDDIEDLNLGSSNPKVLGKMDNDEDKDGQGLMDESRTQTSR

Query:  GQDGGQPKMTQSGTQPTTGDKDCLPYKATEETEEEINRLIRSINESVIYDEMKKKEDNR
        GQDGGQ K+T+S T PT  DKD  PYKATE+T EEINRLIRSI+ESVIYDE+KKKE  R
Subjt:  GQDGGQPKMTQSGTQPTTGDKDCLPYKATEETEEEINRLIRSINESVIYDEMKKKEDNR

KAA0050943.1 exonuclease mut-7-like protein isoform X1 [Cucumis melo var. makuwa]

2.50e-62

59.72

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Query:  SRGYTAAVDVLEHFSIHQSGQSLLYSMLQNNEFKAAEKWATFMGNPMLHLLVQDLINRNKLKSAYGVIKKNDLQKEFPDVYQKCK---------------
        ++GYT AVDVLEHFSIHQSGQSLLYSMLQNNEFKAAEKWATFMG PMLHLLVQ+LINRNKLKSAYGVIKKNDLQKEFPDVYQKCK               
Subjt:  SRGYTAAVDVLEHFSIHQSGQSLLYSMLQNNEFKAAEKWATFMGNPMLHLLVQDLINRNKLKSAYGVIKKNDLQKEFPDVYQKCK---------------

Query:  -------------------------------------------RERKGSYGQKLPNHYLNLNQLIAGDIYGLTMLMLYIMQHA---ISRSVVVGIDCEWK
                                                   +ER+GSYGQKL NHYLNLNQLIAGDI  L +     + HA   I    VVGIDCEWK
Subjt:  -------------------------------------------RERKGSYGQKLPNHYLNLNQLIAGDIYGLTMLMLYIMQHA---ISRSVVVGIDCEWK

Query:  PNYIKGKKQNK
        PNYIKGKK NK
Subjt:  PNYIKGKKQNK

TYK01098.1 protein Ycf2-like [Cucumis melo var. makuwa]

1.09e-103

100

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Query:  MLATPIEVGISYFAPFLETEKDIYKEAKDELRKTQNSDRVAHGARAFEEHLDKVEEDQEEDDIEDLNLGSSNPKVLGKMDNDEDKDGQGLMDESRTQTSR
        MLATPIEVGISYFAPFLETEKDIYKEAKDELRKTQNSDRVAHGARAFEEHLDKVEEDQEEDDIEDLNLGSSNPKVLGKMDNDEDKDGQGLMDESRTQTSR
Subjt:  MLATPIEVGISYFAPFLETEKDIYKEAKDELRKTQNSDRVAHGARAFEEHLDKVEEDQEEDDIEDLNLGSSNPKVLGKMDNDEDKDGQGLMDESRTQTSR

Query:  GQDGGQPKMTQSGTQPTTGDKDCLPYKATEETEEEINRLIRSINESVIYDEMKKKEDNREP
        GQDGGQPKMTQSGTQPTTGDKDCLPYKATEETEEEINRLIRSINESVIYDEMKKKEDNREP
Subjt:  GQDGGQPKMTQSGTQPTTGDKDCLPYKATEETEEEINRLIRSINESVIYDEMKKKEDNREP

XP_008450552.1 PREDICTED: uncharacterized protein LOC103492118 [Cucumis melo]

7.17e-62

59.72

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Query:  SRGYTAAVDVLEHFSIHQSGQSLLYSMLQNNEFKAAEKWATFMGNPMLHLLVQDLINRNKLKSAYGVIKKNDLQKEFPDVYQKCK---------------
        ++GYT AVDVLEHFSIHQSGQSLLYSMLQNNEFKAAEKWATFMG PMLHLLVQ+LINRNKLKSAYGVIKKNDLQKEFPDVYQKCK               
Subjt:  SRGYTAAVDVLEHFSIHQSGQSLLYSMLQNNEFKAAEKWATFMGNPMLHLLVQDLINRNKLKSAYGVIKKNDLQKEFPDVYQKCK---------------

Query:  -------------------------------------------RERKGSYGQKLPNHYLNLNQLIAGDIYGLTMLMLYIMQHA---ISRSVVVGIDCEWK
                                                   +ER+GSYGQKL NHYLNLNQLIAGDI  L +     + HA   I    VVGIDCEWK
Subjt:  -------------------------------------------RERKGSYGQKLPNHYLNLNQLIAGDIYGLTMLMLYIMQHA---ISRSVVVGIDCEWK

Query:  PNYIKGKKQNK
        PNYIKGKK NK
Subjt:  PNYIKGKKQNK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LWB0 3'-5' exonuclease domain-containing protein

7.6e-50

56.46

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Query:  SRGYTAAVDVLEHFSIHQSGQSLLYSMLQNNEFKAAEKWATFMGNPMLHLLVQDLINRNKLKSAYGVIKKNDLQKEFPDVYQKCK---------------
        ++GY  AVDVLEHFSIHQSGQSLLY MLQNNEFKAAEKWATFMG  MLHLLVQ+LINRNKLKSAYGVIKKNDLQKEFPDVYQKCK               
Subjt:  SRGYTAAVDVLEHFSIHQSGQSLLYSMLQNNEFKAAEKWATFMGNPMLHLLVQDLINRNKLKSAYGVIKKNDLQKEFPDVYQKCK---------------

Query:  -------------------------------------------RERKGSYGQKLPNHYLNLNQLIAGDIYGLTML-MLYIMQHAISRSVVVGIDCEWKPN
                                                   +ER+GSY QKLPNHYL+LNQLI G+I  +     L+     I    VVGIDCEWKPN
Subjt:  -------------------------------------------RERKGSYGQKLPNHYLNLNQLIAGDIYGLTML-MLYIMQHAISRSVVVGIDCEWKPN

Query:  YIKGKKQNK
        YIKGKK NK
Subjt:  YIKGKKQNK

A0A1S3BPE9 uncharacterized protein LOC103492118

6.6e-54

59.33

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Query:  SRGYTAAVDVLEHFSIHQSGQSLLYSMLQNNEFKAAEKWATFMGNPMLHLLVQDLINRNKLKSAYGVIKKNDLQKEFPDVYQKCK---------------
        ++GYT AVDVLEHFSIHQSGQSLLYSMLQNNEFKAAEKWATFMG PMLHLLVQ+LINRNKLKSAYGVIKKNDLQKEFPDVYQKCK               
Subjt:  SRGYTAAVDVLEHFSIHQSGQSLLYSMLQNNEFKAAEKWATFMGNPMLHLLVQDLINRNKLKSAYGVIKKNDLQKEFPDVYQKCK---------------

Query:  -------------------------------------------RERKGSYGQKLPNHYLNLNQLIAGDIYGLTML-MLYIMQHAISRSVVVGIDCEWKPN
                                                   +ER+GSYGQKL NHYLNLNQLIAGDI  +     L+     I    VVGIDCEWKPN
Subjt:  -------------------------------------------RERKGSYGQKLPNHYLNLNQLIAGDIYGLTML-MLYIMQHAISRSVVVGIDCEWKPN

Query:  YIKGKKQNK
        YIKGKK NK
Subjt:  YIKGKKQNK

A0A5A7TZZ0 Protein Ycf2-like

8.6e-54

74.84

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Query:  MLATPIEVGISYFAPFLETEKDIYKEAKDELRKTQNSDRVAHGARAFEEHLDKVEEDQEEDDIEDLNLGSSNPKVLGKMDNDEDKDGQGLMDESRTQTSR
        MLATP EVG+ YFAPF+ETEKDI KEA+DELRKT+NSD +  GA AFEEHLDKVEEDQEEDD+EDLNL SS+  VLGK D+DEDKDG+ L+DESR ++SR
Subjt:  MLATPIEVGISYFAPFLETEKDIYKEAKDELRKTQNSDRVAHGARAFEEHLDKVEEDQEEDDIEDLNLGSSNPKVLGKMDNDEDKDGQGLMDESRTQTSR

Query:  GQDGGQPKMTQSGTQPTTGDKDCLPYKATEETEEEINRLIRSINESVIYDEMKKKEDNR
        GQDGGQ K+T+S T PT  DKD  PYKATE+T EEINRLIRSI+ESVIYDE+KKKE  R
Subjt:  GQDGGQPKMTQSGTQPTTGDKDCLPYKATEETEEEINRLIRSINESVIYDEMKKKEDNR

A0A5D3BPW6 Protein Ycf2-like

2.8e-81

100

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Query:  MLATPIEVGISYFAPFLETEKDIYKEAKDELRKTQNSDRVAHGARAFEEHLDKVEEDQEEDDIEDLNLGSSNPKVLGKMDNDEDKDGQGLMDESRTQTSR
        MLATPIEVGISYFAPFLETEKDIYKEAKDELRKTQNSDRVAHGARAFEEHLDKVEEDQEEDDIEDLNLGSSNPKVLGKMDNDEDKDGQGLMDESRTQTSR
Subjt:  MLATPIEVGISYFAPFLETEKDIYKEAKDELRKTQNSDRVAHGARAFEEHLDKVEEDQEEDDIEDLNLGSSNPKVLGKMDNDEDKDGQGLMDESRTQTSR

Query:  GQDGGQPKMTQSGTQPTTGDKDCLPYKATEETEEEINRLIRSINESVIYDEMKKKEDNREP
        GQDGGQPKMTQSGTQPTTGDKDCLPYKATEETEEEINRLIRSINESVIYDEMKKKEDNREP
Subjt:  GQDGGQPKMTQSGTQPTTGDKDCLPYKATEETEEEINRLIRSINESVIYDEMKKKEDNREP

A0A5D3CG08 Exonuclease mut-7-like protein isoform X1

6.6e-54

59.33

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Query:  SRGYTAAVDVLEHFSIHQSGQSLLYSMLQNNEFKAAEKWATFMGNPMLHLLVQDLINRNKLKSAYGVIKKNDLQKEFPDVYQKCK---------------
        ++GYT AVDVLEHFSIHQSGQSLLYSMLQNNEFKAAEKWATFMG PMLHLLVQ+LINRNKLKSAYGVIKKNDLQKEFPDVYQKCK               
Subjt:  SRGYTAAVDVLEHFSIHQSGQSLLYSMLQNNEFKAAEKWATFMGNPMLHLLVQDLINRNKLKSAYGVIKKNDLQKEFPDVYQKCK---------------

Query:  -------------------------------------------RERKGSYGQKLPNHYLNLNQLIAGDIYGLTML-MLYIMQHAISRSVVVGIDCEWKPN
                                                   +ER+GSYGQKL NHYLNLNQLIAGDI  +     L+     I    VVGIDCEWKPN
Subjt:  -------------------------------------------RERKGSYGQKLPNHYLNLNQLIAGDIYGLTML-MLYIMQHAISRSVVVGIDCEWKPN

Query:  YIKGKKQNK
        YIKGKK NK
Subjt:  YIKGKKQNK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G56310.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

2.0e-23

29.53

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Query:  TQPTTGDKDCLPYKATEETEEEINRLIRSINESVIYDEMKKKEDNREPSHCRLFCLRVISSLPVVARCS-WLRVLFVVARKQVRCFIVAL--SRGYTAAV
        ++PT+ +  CL  K   +        + ++  S+ YDE             R+F +R+ S    ++    W R  F      +  +I  L  S+ +  AV
Subjt:  TQPTTGDKDCLPYKATEETEEEINRLIRSINESVIYDEMKKKEDNREPSHCRLFCLRVISSLPVVARCS-WLRVLFVVARKQVRCFIVAL--SRGYTAAV

Query:  DVLEHFSIHQSGQSLLYSMLQNNEFKAAEKWATFMGNPMLHLLVQDLINRNKLKSAYGVIKKNDLQKEFPDVYQKCKRER--------------------
         +LEHFS    G++ L  M+++  F+AAE+WATFMG P L +LVQ+  +RN LK AY +I KN LQ +FP++Y KCK                       
Subjt:  DVLEHFSIHQSGQSLLYSMLQNNEFKAAEKWATFMGNPMLHLLVQDLINRNKLKSAYGVIKKNDLQKEFPDVYQKCKRER--------------------

Query:  ------------KGSYGQK-----------------------LPNHYLNLNQLIAGDIYGLTML-MLYIMQHAISRSVVVGIDCEWKPNYIKGKKQNK
                    +  Y +K                       +   +L LN L   D+  +  +  L      +    VVGIDCEWKPNYIKG KQNK
Subjt:  ------------KGSYGQK-----------------------LPNHYLNLNQLIAGDIYGLTML-MLYIMQHAISRSVVVGIDCEWKPNYIKGKKQNK

Sequences

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CDS sequence

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ATGCTCGCTACACCAATTGAAGTTGGAATCTCATATTTTGCACCATTCCTGGAGACAGAAAAAGATATATACAAAGAAGCAAAGGATGAGCTTCGAAAGACCCAAAATTC
TGACCGCGTAGCCCATGGAGCAAGGGCGTTTGAAGAGCACCTTGACAAGGTGGAGGAGGACCAAGAAGAAGATGACATTGAAGATTTAAACTTGGGTTCAAGCAATCCAA
AGGTGCTTGGAAAAATGGATAATGATGAAGACAAAGATGGACAAGGGCTCATGGATGAAAGTCGAACACAAACTTCCAGAGGGCAAGATGGTGGACAACCTAAAATGACA
CAATCAGGCACACAACCAACAACTGGAGATAAAGATTGTTTGCCATATAAGGCCACGGAGGAAACCGAGGAGGAGATAAACAGGTTGATACGGTCAATCAATGAAAGTGT
TATATATGATGAAATGAAGAAAAAAGAAGACAACAGGGAACCTAGCCATTGCCGCCTCTTTTGTCTGCGTGTCATTTCGTCGTTGCCCGTGGTTGCTCGTTGCTCATGGT
TGCGCGTTCTGTTCGTGGTCGCTCGCAAGCAGGTTCGTTGCTTCATCGTGGCCCTTTCCCGTGGTTACACGGCAGCTGTTGATGTATTAGAGCATTTCTCTATTCACCAA
TCTGGGCAGTCTCTTCTCTATAGCATGCTGCAGAACAATGAATTTAAAGCAGCTGAGAAATGGGCCACTTTCATGGGAAATCCAATGTTACATTTGCTTGTCCAGGACTT
GATAAATAGAAACAAGCTAAAAAGTGCATATGGAGTTATAAAGAAAAATGATTTGCAGAAGGAATTTCCCGATGTCTATCAGAAGTGTAAGAGAGAACGTAAGGGAAGTT
ATGGACAGAAGTTACCGAACCACTATTTGAATCTTAATCAACTAATTGCTGGAGATATTTATGGGTTGACAATGCTGATGCTTTACATCATGCAACACGCCATATCGAGG
AGTGTAGTTGTAGGTATTGATTGTGAGTGGAAACCTAACTATATAAAGGGCAAGAAACAGAACAAGAAAGGGAAAAAGTTAAAGACTTGTATACGTATATGGGCTATTTG
CAACGTTAAGCATTTAGTATCTTCTTTGAGGCATGAAATAAAAGAGTTAAATGAGAGGTTGGAAACCGCAAATGCAAGGGCTCAATCGTTTGAGAAGAAGCAAGGATATT
GCAACAAGAAAAAGTTCATATTGTAA

mRNA sequence

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Protein sequence

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MLATPIEVGISYFAPFLETEKDIYKEAKDELRKTQNSDRVAHGARAFEEHLDKVEEDQEEDDIEDLNLGSSNPKVLGKMDNDEDKDGQGLMDESRTQTSRGQDGGQPKMT
QSGTQPTTGDKDCLPYKATEETEEEINRLIRSINESVIYDEMKKKEDNREPSHCRLFCLRVISSLPVVARCSWLRVLFVVARKQVRCFIVALSRGYTAAVDVLEHFSIHQ
SGQSLLYSMLQNNEFKAAEKWATFMGNPMLHLLVQDLINRNKLKSAYGVIKKNDLQKEFPDVYQKCKRERKGSYGQKLPNHYLNLNQLIAGDIYGLTMLMLYIMQHAISR
SVVVGIDCEWKPNYIKGKKQNKKGKKLKTCIRIWAICNVKHLVSSLRHEIKELNERLETANARAQSFEKKQGYCNKKKFIL

IVF0012003 (gene) of Melon (IVF77) v1 genome