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IVF0012039 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012039
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr09:13332774..13333208
RNA-Seq ExpressionIVF0012039
SyntenyIVF0012039
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035946.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.73e-3454.84Show/hide
Query:  QECRLLKYVASEKAIVSNKLQSRMSSFQICCSR----------EGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEK----------SHR
        +E R LKYV +EK  +SN LQ R SS QICCS+          E   LK+V A++V+ SNML     SSQICC REG  LKYVV EK            R
Subjt:  QECRLLKYVASEKAIVSNKLQSRMSSFQICCSR----------EGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEK----------SHR

Query:  LKYVAAEKSIIFIFLHVLQPRRSTFSSSCGASNHHLRCRRSSSSMQRDTNDHHLQ
        LKYV AEK I+    ++LQ RRST SSSCGASNHHLR  RSSSSM+ D  DHHLQ
Subjt:  LKYVAAEKSIIFIFLHVLQPRRSTFSSSCGASNHHLRCRRSSSSMQRDTNDHHLQ

KAA0059640.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.79e-3354.17Show/hide
Query:  CRQECRLLKYVASEKAIVSNKLQSRMSSFQICCSREGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEKSHRLKYVAAEKSIIFIF----
        C QE   LKYVA EK ++ N LQ R S  Q C SRE HRLKYV  +KV+VSNMLQ    SSQICC +E  HLKYV  EK      +   +S+  I     
Subjt:  CRQECRLLKYVASEKAIVSNKLQSRMSSFQICCSREGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEKSHRLKYVAAEKSIIFIF----

Query:  ---LHVLQPRRSTFSSSCGASNHHLRCRRSSSSMQRDTNDHHLQ
           L  + P RST SSSCGASNHHLRC +SSSSM  + +DHHLQ
Subjt:  ---LHVLQPRRSTFSSSCGASNHHLRCRRSSSSMQRDTNDHHLQ

KAA0060518.1 hypothetical protein E6C27_scaffold22G003700 [Cucumis melo var. makuwa]2.20e-3249.03Show/hide
Query:  SSSQICCRQECRLLKYVASEKAIVSNKLQSRMSSFQICCSREGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEK------------SHR
        SSS +CC +E R LK+V +EK I SN L SR  S QIC SR+G RLKYV  +KV++SNMLQS   SSQICC REG  LKYV VEK               
Subjt:  SSSQICCRQECRLLKYVASEKAIVSNKLQSRMSSFQICCSREGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEK------------SHR

Query:  LKYVAAEKSIIFIFLHVLQPRRSTFSSSCGASNHHLRCRRSSSSMQRDTNDHHLQ
        LKYV AEK  +    ++LQPRRS+    C   N HL    + + +     DHHLQ
Subjt:  LKYVAAEKSIIFIFLHVLQPRRSTFSSSCGASNHHLRCRRSSSSMQRDTNDHHLQ

KAA0066592.1 hypothetical protein E6C27_scaffold25G001670 [Cucumis melo var. makuwa]1.25e-3053.03Show/hide
Query:  SSSQICCRQECRLLKYVASEKAIVSNKLQSRMSSFQICCSREGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEKS--------------
        SSSQIC RQE R LKYVA EK +VSN LQ R SSFQICCSREG RLKYV  +K+VVSNMLQS   SS ICC +E   LKYV +EK               
Subjt:  SSSQICCRQECRLLKYVASEKAIVSNKLQSRMSSFQICCSREGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEKS--------------

Query:  -------HRLKYVAAEKSIIFIFLHVLQPRRS
                RLKY   EK ++    ++LQ RR+
Subjt:  -------HRLKYVAAEKSIIFIFLHVLQPRRS

TYK08171.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.79e-3354.17Show/hide
Query:  CRQECRLLKYVASEKAIVSNKLQSRMSSFQICCSREGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEKSHRLKYVAAEKSIIFIF----
        C QE   LKYVA EK ++ N LQ R S  Q C SRE HRLKYV  +KV+VSNMLQ    SSQICC +E  HLKYV  EK      +   +S+  I     
Subjt:  CRQECRLLKYVASEKAIVSNKLQSRMSSFQICCSREGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEKSHRLKYVAAEKSIIFIF----

Query:  ---LHVLQPRRSTFSSSCGASNHHLRCRRSSSSMQRDTNDHHLQ
           L  + P RST SSSCGASNHHLRC +SSSSM  + +DHHLQ
Subjt:  ---LHVLQPRRSTFSSSCGASNHHLRCRRSSSSMQRDTNDHHLQ

TrEMBL top hitse value%identityAlignment
A0A5A7SLN4 Zinc finger Y-chromosomal protein 1-like isoform X16.1e-2352.55Show/hide
Query:  MSSSQICCRQECR-----------LLKYVASEKAIVSNKLQSRMSSFQICCSREGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEKSHR
        MSSSQIC R+  R           +L+YVA+EK +VSN LQ R SSFQICCS++   LKY+ A+KVVVS +LQ    SSQIC RR GC LKYV  EK   
Subjt:  MSSSQICCRQECR-----------LLKYVASEKAIVSNKLQSRMSSFQICCSREGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEKSHR

Query:  LKYVAAEKSIIFIFLHVLQPRRSTFSSSCGASNHHLR
        LKYVAAEK ++    ++LQPRRS+F   C   +  L+
Subjt:  LKYVAAEKSIIFIFLHVLQPRRSTFSSSCGASNHHLR

A0A5A7T154 Ty3-gypsy retrotransposon protein3.7e-2854.84Show/hide
Query:  QECRLLKYVASEKAIVSNKLQSRMSSFQICCSR----------EGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEK----------SHR
        +E R LKYV +EK  +SN LQ R SS QICCS+          E   LK+V A++V+ SNML     SSQICC REG  LKYVV EK            R
Subjt:  QECRLLKYVASEKAIVSNKLQSRMSSFQICCSR----------EGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEK----------SHR

Query:  LKYVAAEKSIIFIFLHVLQPRRSTFSSSCGASNHHLRCRRSSSSMQRDTNDHHLQ
        LKYV AEK I+    ++LQ RRST SSSCGASNHHLR  RSSSSM+ D  DHHLQ
Subjt:  LKYVAAEKSIIFIFLHVLQPRRSTFSSSCGASNHHLRCRRSSSSMQRDTNDHHLQ

A0A5A7UWX8 Ty3-gypsy retrotransposon protein5.4e-2754.17Show/hide
Query:  CRQECRLLKYVASEKAIVSNKLQSRMSSFQICCSREGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEKSHRLKYVAAEKSIIFIF----
        C QE   LKYVA EK ++ N LQ R S  Q C SRE HRLKYV  +KV+VSNMLQ    SSQICC +E  HLKYV  EK      +   +S+  I     
Subjt:  CRQECRLLKYVASEKAIVSNKLQSRMSSFQICCSREGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEKSHRLKYVAAEKSIIFIF----

Query:  ---LHVLQPRRSTFSSSCGASNHHLRCRRSSSSMQRDTNDHHLQ
           L  + P RST SSSCGASNHHLRC +SSSSM  + +DHHLQ
Subjt:  ---LHVLQPRRSTFSSSCGASNHHLRCRRSSSSMQRDTNDHHLQ

A0A5D3BNW3 Uncharacterized protein8.6e-2549.03Show/hide
Query:  SSSQICCRQECRLLKYVASEKAIVSNKLQSRMSSFQICCSREGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEK------------SHR
        SSS +CC +E R LK+V +EK I SN L SR  S QIC SR+G RLKYV  +KV++SNMLQS   SSQICC REG  LKYV VEK               
Subjt:  SSSQICCRQECRLLKYVASEKAIVSNKLQSRMSSFQICCSREGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEK------------SHR

Query:  LKYVAAEKSIIFIFLHVLQPRRSTFSSSCGASNHHLRCRRSSSSMQRDTNDHHLQ
        LKYV AEK  +    ++LQPRRS+    C   N HL    + + +     DHHLQ
Subjt:  LKYVAAEKSIIFIFLHVLQPRRSTFSSSCGASNHHLRCRRSSSSMQRDTNDHHLQ

A0A5D3C8K3 Ty3-gypsy retrotransposon protein5.4e-2754.17Show/hide
Query:  CRQECRLLKYVASEKAIVSNKLQSRMSSFQICCSREGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEKSHRLKYVAAEKSIIFIF----
        C QE   LKYVA EK ++ N LQ R S  Q C SRE HRLKYV  +KV+VSNMLQ    SSQICC +E  HLKYV  EK      +   +S+  I     
Subjt:  CRQECRLLKYVASEKAIVSNKLQSRMSSFQICCSREGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEKSHRLKYVAAEKSIIFIF----

Query:  ---LHVLQPRRSTFSSSCGASNHHLRCRRSSSSMQRDTNDHHLQ
           L  + P RST SSSCGASNHHLRC +SSSSM  + +DHHLQ
Subjt:  ---LHVLQPRRSTFSSSCGASNHHLRCRRSSSSMQRDTNDHHLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCGTCTCAAATATGTTGCAGACAAGAATGTCGTCTCCTCAAATATGTTGCATCCGAGAAGGCCATCGTCTCAAACAAGTTACAGTCGAGAATGTCGTCATTTCA
AATATGTTGCAGCCGAGAAGGTCATCGTCTCAAATATGTTGCAGCCAAGAAGGTCGTTGTCTCAAATATGTTGCAGTCAATAACGTTGTCGTCTCAAATATGTTGTCGCC
GAGAAGGTTGTCATCTCAAATATGTTGTAGTTGAAAAAAGTCATCGTCTCAAATACGTTGCAGCCGAGAAGAGCATTATCTTCATTTTCTTACATGTGTTGCAACCGAGG
CGATCAACATTTTCATCTTCATGTGGTGCAAGCAATCATCATCTTCGGTGCAGGCGATCATCATCTTCAATGCAACGTGACACAAACGATCATCATCTTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCGTCTCAAATATGTTGCAGACAAGAATGTCGTCTCCTCAAATATGTTGCATCCGAGAAGGCCATCGTCTCAAACAAGTTACAGTCGAGAATGTCGTCATTTCA
AATATGTTGCAGCCGAGAAGGTCATCGTCTCAAATATGTTGCAGCCAAGAAGGTCGTTGTCTCAAATATGTTGCAGTCAATAACGTTGTCGTCTCAAATATGTTGTCGCC
GAGAAGGTTGTCATCTCAAATATGTTGTAGTTGAAAAAAGTCATCGTCTCAAATACGTTGCAGCCGAGAAGAGCATTATCTTCATTTTCTTACATGTGTTGCAACCGAGG
CGATCAACATTTTCATCTTCATGTGGTGCAAGCAATCATCATCTTCGGTGCAGGCGATCATCATCTTCAATGCAACGTGACACAAACGATCATCATCTTCAATAA
Protein sequenceShow/hide protein sequence
MSSSQICCRQECRLLKYVASEKAIVSNKLQSRMSSFQICCSREGHRLKYVAAKKVVVSNMLQSITLSSQICCRREGCHLKYVVVEKSHRLKYVAAEKSIIFIFLHVLQPR
RSTFSSSCGASNHHLRCRRSSSSMQRDTNDHHLQ