CuGenDBv2

Gene ID	IVF0012081
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribosomal L18p/L5e family protein
Genome location	chr03:10487629..10488504
RNA-Seq Expression	IVF0012081
Synteny	IVF0012081
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008097 - 5S rRNA binding (molecular function)
InterPro domains	IPR005484 - Ribosomal protein L18

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8646622.1 hypothetical protein Csa_005380 [Cucumis sativus]

1.10e-73

95.87

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVG KLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGIAVDGLRSL
        VLPLFDSVQRSG+AVDG   L
Subjt:  VLPLFDSVQRSGIAVDGLRSL

XP_004140885.1 uncharacterized protein LOC101204363 [Cucumis sativus]

1.10e-73

95.87

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVG KLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGIAVDGLRSL
        VLPLFDSVQRSG+AVDG   L
Subjt:  VLPLFDSVQRSGIAVDGLRSL

XP_016900104.1 PREDICTED: uncharacterized protein LOC103488672 [Cucumis melo]

1.15e-75

96.75

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGIAVDGLRSLEK
        VLPLFDSVQRSGIAVDG+  L K
Subjt:  VLPLFDSVQRSGIAVDGLRSLEK

XP_038884095.1 uncharacterized protein LOC120075027 isoform X2 [Benincasa hispida]

4.67e-72

89.76

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSI+QNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVG KLGHRLKEIGVSDVRIDLAEE SRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGIAVDGLRSLEKVRSS
        VLPLFDSVQRSG+AVDG   L   R S
Subjt:  VLPLFDSVQRSGIAVDGLRSLEKVRSS

XP_038884098.1 uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida]

4.17e-72

86.47

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSI+QNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVG KLGHRLKEIGVSDVRIDLAEE SRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGIAVDGLRSLEKVRSSLDSYFF
        VLPLFDSVQRSG+AVDG    EK+ +   ++FF
Subjt:  VLPLFDSVQRSGIAVDGLRSLEKVRSSLDSYFF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KE39 Uncharacterized protein

6.8e-56

95.87

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVG KLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGIAVDGLRSL
        VLPLFDSVQRSG+AVDG   L
Subjt:  VLPLFDSVQRSGIAVDGLRSL

A0A1S4DVU4 uncharacterized protein LOC103488672

1.6e-57

96.75

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGIAVDGLRSLEK
        VLPLFDSVQRSGIAVDG+  L K
Subjt:  VLPLFDSVQRSGIAVDGLRSLEK

A0A5D3BWW4 Uncharacterized protein

1.6e-57

96.75

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGIAVDGLRSLEK
        VLPLFDSVQRSGIAVDG+  L K
Subjt:  VLPLFDSVQRSGIAVDGLRSLEK

A0A6J1EVG7 uncharacterized protein LOC111436340

3.3e-50

87.6

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAY RSKLHRFPRSNNFWDSK+ASRVG KLGHRLKEIGVSDVRIDLAEELSRP+ YR  
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGIAVDGLRSL
        VLPLFDSV+RSG+AV+G   L
Subjt:  VLPLFDSVQRSGIAVDGLRSL

A0A6J1JZ79 uncharacterized protein LOC111488745

1.0e-51

88.43

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Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAYY SKLHRFPRSNNFWDSK+ASRVG KLGHRLKEIGVSDVRIDLAEELSRP+YYR  
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGIAVDGLRSL
        VLPLFDSV+RSG+AV+G   L
Subjt:  VLPLFDSVQRSGIAVDGLRSL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G43310.1 Ribosomal L18p/L5e family protein

5.1e-40

67.77

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Query:  NQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLP
        +++HLL+LVLSCRKITAQVT P +S+IIAMASSSEQEF+A  R+ L+RFP SN+FWDSK ASRVG KLG RL+E+GV  V ID  EE+SRPI++RK VLP
Subjt:  NQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLP

Query:  LFDSVQRSGIAVDGLRSLEKV
        LFDSV+R+GI VDG   L  +
Subjt:  LFDSVQRSGIAVDGLRSLEKV

Sequences

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CDS sequence

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ATGTCCATTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACCGCCCAGGTCACCAATCCAGCCACCTCCTCCATCATCGCCATGGCTTCTTCCTC
CGAGCAGGAATTCGTCGCCTATTACCGCTCCAAACTCCACCGCTTTCCTCGATCCAACAATTTCTGGGATTCCAAAGTCGCCTCTCGCGTCGGCATAAAGCTTGGCCACC
GTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTCGCTGAAGAACTCTCCCGCCCTATTTACTACCGGAAGATGGTTCTGCCGCTCTTCGATTCTGTTCAGCGC
TCCGGCATCGCCGTTGATGGGTTGAGAAGCTTGGAAAAGGTTCGATCTAGCCTCGACTCTTATTTTTTCCGATCGGAGCTTGTACGTTTCGCGATTGAGATTGAATTTAG
GGCACATATAATTGCTTATCCTCCATGTCGATTTATCATACCAATTTTGACTCATTTTCGATCTTTCTTTTGGATTCAAATTGTAATAATATAA

mRNA sequence

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GGAAAATTAGATTTTTCTAAAAAGGTTAGTTTTGGAAATAAAAAAAGGTTAAAAATAAAAAATTCTCCAATATAAAATTATGATTTCCAAATTGTTCAAACAAAGTTCAA
TGGGAGAAGATAATAGAAGGCGATTTTGAAGCCCTAATAAATACGCCCAGTTCCTCATCATGTCCATTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAA
ATCACCGCCCAGGTCACCAATCCAGCCACCTCCTCCATCATCGCCATGGCTTCTTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCCAAACTCCACCGCTTTCCTCG
ATCCAACAATTTCTGGGATTCCAAAGTCGCCTCTCGCGTCGGCATAAAGCTTGGCCACCGTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTCGCTGAAGAAC
TCTCCCGCCCTATTTACTACCGGAAGATGGTTCTGCCGCTCTTCGATTCTGTTCAGCGCTCCGGCATCGCCGTTGATGGGTTGAGAAGCTTGGAAAAGGTTCGATCTAGC
CTCGACTCTTATTTTTTCCGATCGGAGCTTGTACGTTTCGCGATTGAGATTGAATTTAGGGCACATATAATTGCTTATCCTCCATGTCGATTTATCATACCAATTTTGAC
TCATTTTCGATCTTTCTTTTGGATTCAAATTGTAATAATATAAATTGTTTTCATAATTAGTGAAAGAAATAGAGAAGAGACCAATTTCCCCTTTGGAATTTTGGCCATTT
TGTCCTTGGCAGTGTTGAACTGCCTACAGATTATACTTGGCTGAAAAAAAAGGTAGCTATTGTAATTAGACAATATTTTTTTAAATAACTCCTAACGTCGATGAAT

Protein sequence

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MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQR
SGIAVDGLRSLEKVRSSLDSYFFRSELVRFAIEIEFRAHIIAYPPCRFIIPILTHFRSFFWIQIVII

IVF0012081 (gene) of Melon (IVF77) v1 genome