; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0012105 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012105
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGeranylgeranyl transferase type-2 subunit beta-like
Genome locationchr11:12007151..12007447
RNA-Seq ExpressionIVF0012105
SyntenyIVF0012105
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0008318 - protein prenyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031621.1 geranylgeranyl transferase type-2 subunit beta-like [Cucumis melo var. makuwa]2.53e-4578.57Show/hide
Query:  MSGFAVTSVFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSLKLDHD
        MSG AV SVFCCVG+LAIMGSLQHIDKDLL               GRPEKL ECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGS +LDHD
Subjt:  MSGFAVTSVFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSLKLDHD
KAF5939185.1 hypothetical protein HYC85_023444 [Camellia sinensis]2.41e-0551.92Show/hide
Query:  FAVTSVFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECG
        +    VFCCVGALAI GSL HIDKDLL +             GRPEKL + G
Subjt:  FAVTSVFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECG
KDO47736.1 hypothetical protein CISIN_1g0213052mg [Citrus sinensis]3.86e-0638.89Show/hide
Query:  VFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSLKLDHD
        +FCCVGALAI G+L H+DKDLL +             GRPEKL + G                              LLL VGS KLDHD
Subjt:  VFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSLKLDHD
TXG61665.1 hypothetical protein EZV62_013028 [Acer yangbiense]2.35e-0540.45Show/hide
Query:  VFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECGFELLLHTLTNSWLGSYSYSPTHQLHC---VASVLLLTVGSLK
        +FCCVGALAI G+L H+DKDLL +             GRPEKL + G  LLL  L N  +           H    VA + LL    LK
Subjt:  VFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECGFELLLHTLTNSWLGSYSYSPTHQLHC---VASVLLLTVGSLK
XP_021320434.1 geranylgeranyl transferase type-2 subunit beta 1 isoform X1 [Sorghum bicolor]1.89e-0553.85Show/hide
Query:  VFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECGFELLL
        +FCCVGALAI GSL HID+DLL +             GRPEKL +  F LLL
Subjt:  VFCCVGALAIMGSLQHIDKDLLVY-------------GRPEKLLECGFELLL
TrEMBL top hitse value%identityAlignment
A0A5A7SQ05 Geranylgeranyl transferase type-2 subunit beta-like5.0e-3378.57Show/hide
Query:  MSGFAVTSVFCCVGALAIMGSLQHIDKDLL-------------VYGRPEKLLECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSLKLDHD
        MSG AV SVFCCVG+LAIMGSLQHIDKDLL               GRPEKL ECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGS +LDHD
Subjt:  MSGFAVTSVFCCVGALAIMGSLQHIDKDLL-------------VYGRPEKLLECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSLKLDHD
SwissProt top hitse value%identityAlignment
Q84J75 Geranylgeranyl transferase type-2 subunit beta 14.7e-0458.82Show/hide
Query:  VFCCVGALAIMGSLQHIDKDLLVYGRPEKLLECG
        +FCCVGALAI GSL H+DKD L +   E+ L+ G
Subjt:  VFCCVGALAIMGSLQHIDKDLLVYGRPEKLLECG
Arabidopsis top hitse value%identityAlignment
AT3G12070.1 RAB geranylgeranyl transferase beta subunit 22.9e-0450Show/hide
Query:  VFCCVGALAIMGSLQHIDKDLL--------------VYGRPEKL
        +FCCVGALAI G+L  +DKDLL              + GRPEKL
Subjt:  VFCCVGALAIMGSLQHIDKDLL--------------VYGRPEKL
AT3G12070.2 RAB geranylgeranyl transferase beta subunit 22.9e-0450Show/hide
Query:  VFCCVGALAIMGSLQHIDKDLL--------------VYGRPEKL
        +FCCVGALAI G+L  +DKDLL              + GRPEKL
Subjt:  VFCCVGALAIMGSLQHIDKDLL--------------VYGRPEKL
AT5G12210.1 RAB geranylgeranyl transferase beta subunit 13.4e-0558.82Show/hide
Query:  VFCCVGALAIMGSLQHIDKDLLVYGRPEKLLECG
        +FCCVGALAI GSL H+DKD L +   E+ L+ G
Subjt:  VFCCVGALAIMGSLQHIDKDLLVYGRPEKLLECG
AT5G12210.2 RAB geranylgeranyl transferase beta subunit 13.4e-0558.82Show/hide
Query:  VFCCVGALAIMGSLQHIDKDLLVYGRPEKLLECG
        +FCCVGALAI GSL H+DKD L +   E+ L+ G
Subjt:  VFCCVGALAIMGSLQHIDKDLLVYGRPEKLLECG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGGTTTTGCTGTGACTTCAGTTTTCTGTTGTGTTGGCGCACTTGCTATAATGGGTTCTCTACAACATATTGACAAGGATCTCCTTGTCTATGGTCGACCCGAGAA
ACTTCTTGAATGTGGGTTCGAACTCCTATTACATACTCTAACCAATTCTTGGCTTGGAAGTTATTCATACTCTCCCACTCACCAACTTCATTGTGTTGCTTCAGTTTTGC
TACTCACGGTGGGTTCTTTGAAACTTGATCATGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGGTTTTGCTGTGACTTCAGTTTTCTGTTGTGTTGGCGCACTTGCTATAATGGGTTCTCTACAACATATTGACAAGGATCTCCTTGTCTATGGTCGACCCGAGAA
ACTTCTTGAATGTGGGTTCGAACTCCTATTACATACTCTAACCAATTCTTGGCTTGGAAGTTATTCATACTCTCCCACTCACCAACTTCATTGTGTTGCTTCAGTTTTGC
TACTCACGGTGGGTTCTTTGAAACTTGATCATGATTGA
Protein sequenceShow/hide protein sequence
MSGFAVTSVFCCVGALAIMGSLQHIDKDLLVYGRPEKLLECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSLKLDHD