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IVF0012121 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012121
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionlight-harvesting complex-like protein OHP1, chloroplastic
Genome locationchr04:31345998..31346604
RNA-Seq ExpressionIVF0012121
SyntenyIVF0012121
Gene Ontology termsGO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137791.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus]4.74e-6890.83Show/hide
Query:  MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELIL
        MASSSVILSSLPPARALT N QD RH LFQIG SVRAN+SRAR SFR+QAAAKPPAGVELPKVEPKF+APFLGFTKTAEIWNSRACMIGLIG FVVELIL
Subjt:  MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELIL

Query:  NKSILQVIGVDVGKGLDLPL
        NK ILQVIGVDVGKGLDLPL
Subjt:  NKSILQVIGVDVGKGLDLPL

XP_008442523.1 PREDICTED: high-light-induced protein, chloroplastic [Cucumis melo]2.35e-77100Show/hide
Query:  MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELIL
        MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELIL
Subjt:  MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELIL

Query:  NKSILQVIGVDVGKGLDLPL
        NKSILQVIGVDVGKGLDLPL
Subjt:  NKSILQVIGVDVGKGLDLPL

XP_022145630.1 light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia]2.93e-5583.47Show/hide
Query:  MASSSVILSS-LPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELI
        MASSS +LSS L PARA T N+QDGR  LFQIGS VRANNSRAR  FRVQAA K PAGVELPKVEPKFEAPFLGFTKTAEIWNSRACM+GL+G F+VELI
Subjt:  MASSSVILSS-LPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELI

Query:  LNKSILQVIGVDVGKGLDLPL
        L+K ILQVIGVDVGKGLDLPL
Subjt:  LNKSILQVIGVDVGKGLDLPL

XP_022934608.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata]6.90e-5481.82Show/hide
Query:  MASSSVILSS-LPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELI
        MASS+ ILSS L PARA   ++QDGR  LFQ+GS VRANN RAR  FRVQAA KPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG FVVELI
Subjt:  MASSSVILSS-LPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELI

Query:  LNKSILQVIGVDVGKGLDLPL
        LNK ILQVIGVD+GKGLDLPL
Subjt:  LNKSILQVIGVDVGKGLDLPL

XP_038905156.1 light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida]3.06e-5785.95Show/hide
Query:  MASSSVILSS-LPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELI
        MASSS ILSS L PARA   +QQDGR  LFQIGS VRANNSR+R  FRVQAA KPPAGVELPKVEPKFEAPFLGFTKTAE+WNSRACMIGLIG FVVELI
Subjt:  MASSSVILSS-LPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELI

Query:  LNKSILQVIGVDVGKGLDLPL
        LNK ILQVIGVDVGKGLDLPL
Subjt:  LNKSILQVIGVDVGKGLDLPL

TrEMBL top hitse value%identityAlignment
A0A0A0LAI0 Uncharacterized protein7.6e-5190.83Show/hide
Query:  MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELIL
        MASSSVILSSLPPARALT N QD RH LFQIG SVRAN+SRAR SFR+QAAAKPPAGVELPKVEPKF+APFLGFTKTAEIWNSRACMIGLIG FVVELIL
Subjt:  MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELIL

Query:  NKSILQVIGVDVGKGLDLPL
        NK ILQVIGVDVGKGLDLPL
Subjt:  NKSILQVIGVDVGKGLDLPL

A0A1S3B5V9 high-light-induced protein, chloroplastic6.4e-58100Show/hide
Query:  MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELIL
        MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELIL
Subjt:  MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELIL

Query:  NKSILQVIGVDVGKGLDLPL
        NKSILQVIGVDVGKGLDLPL
Subjt:  NKSILQVIGVDVGKGLDLPL

A0A5A7TRS8 High-light-induced protein6.4e-58100Show/hide
Query:  MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELIL
        MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELIL
Subjt:  MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELIL

Query:  NKSILQVIGVDVGKGLDLPL
        NKSILQVIGVDVGKGLDLPL
Subjt:  NKSILQVIGVDVGKGLDLPL

A0A6J1CV10 light-harvesting complex-like protein OHP1, chloroplastic3.2e-4183.47Show/hide
Query:  MASSSVIL-SSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELI
        MASSS +L SSL PARA T N+QDGR  LFQIG SVRANNSRAR  FRVQ AAK PAGVELPKVEPKFEAPFLGFTKTAEIWNSRACM+GL+G F+VELI
Subjt:  MASSSVIL-SSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELI

Query:  LNKSILQVIGVDVGKGLDLPL
        L+K ILQVIGVDVGKGLDLPL
Subjt:  LNKSILQVIGVDVGKGLDLPL

A0A6J1J0W8 light-harvesting complex-like protein OHP1, chloroplastic3.5e-4081.82Show/hide
Query:  MASSSVIL-SSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELI
        MASS+ IL SSL PARA   ++QDGR  LFQ+G SVRANN RAR  FRVQ AAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG FVVELI
Subjt:  MASSSVIL-SSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELI

Query:  LNKSILQVIGVDVGKGLDLPL
        LNK ILQVIGVD+GKGLDLPL
Subjt:  LNKSILQVIGVDVGKGLDLPL

SwissProt top hitse value%identityAlignment
O81208 Light-harvesting complex-like protein OHP1, chloroplastic1.3e-2373.97Show/hide
Query:  VQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL
        V  AAK P GV +PK +PK +  FLGFT+TAEIWNSRACMIGLIGTF+VELILNK IL++IGV++GKGLDLPL
Subjt:  VQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL

Arabidopsis top hitse value%identityAlignment
AT5G02120.1 one helix protein9.2e-2573.97Show/hide
Query:  VQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL
        V  AAK P GV +PK +PK +  FLGFT+TAEIWNSRACMIGLIGTF+VELILNK IL++IGV++GKGLDLPL
Subjt:  VQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCTTCCTCTGTGATTTTATCTTCTCTTCCTCCGGCCAGAGCTCTGACTTTTAACCAACAAGACGGTCGCCACGGTCTCTTTCAAATTGGGTCTTCTGTCCGTGC
CAATAACAGCAGGGCTCGTCCCTCTTTCAGGGTTCAGGCCGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGAT
TCACTAAAACTGCTGAAATCTGGAATTCTAGAGCCTGCATGATAGGCCTTATTGGGACTTTCGTAGTGGAGCTGATATTGAACAAGAGTATACTTCAAGTGATTGGAGTT
GATGTTGGGAAAGGCCTGGATCTTCCTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCTTCCTCTGTGATTTTATCTTCTCTTCCTCCGGCCAGAGCTCTGACTTTTAACCAACAAGACGGTCGCCACGGTCTCTTTCAAATTGGGTCTTCTGTCCGTGC
CAATAACAGCAGGGCTCGTCCCTCTTTCAGGGTTCAGGCCGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGAT
TCACTAAAACTGCTGAAATCTGGAATTCTAGAGCCTGCATGATAGGCCTTATTGGGACTTTCGTAGTGGAGCTGATATTGAACAAGAGTATACTTCAAGTGATTGGAGTT
GATGTTGGGAAAGGCCTGGATCTTCCTCTTTGA
Protein sequenceShow/hide protein sequence
MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGV
DVGKGLDLPL