; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0012183 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012183
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionexosome complex component RRP41-like
Genome locationchr11:25235493..25238855
RNA-Seq ExpressionIVF0012183
SyntenyIVF0012183
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0009845 - seed germination (biological process)
GO:0016075 - rRNA catabolic process (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0016740 - transferase activity (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR015847 - Exoribonuclease, phosphorolytic domain 2
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570792.1 Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.36e-17194.59Show/hide
Query:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
        MAKKATP T+T YSPSPT HKTRPP+FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
Subjt:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT

Query:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG
        TFSTPVRGQGSENKEFSSMLHK+LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENYQDG
Subjt:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG

Query:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE
        SLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLV IMRSCLKESAAT+SEE
Subjt:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE

XP_004145749.1 exosome complex component RRP41-like [Cucumis sativus]2.98e-17597.3Show/hide
Query:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
        MAKKATPTTTT YSPSPTVHKTRP LFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
Subjt:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT

Query:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG
        TFSTPVRGQGSENK+FSSMLHKSLEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLID +LEEENYQDG
Subjt:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG

Query:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE
        SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESA TISEE
Subjt:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE

XP_008463959.1 PREDICTED: exosome complex component RRP41-like [Cucumis melo]6.05e-182100Show/hide
Query:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
        MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
Subjt:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT

Query:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG
        TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG
Subjt:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG

Query:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE
        SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE
Subjt:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE

XP_022986160.1 exosome complex component RRP41-like [Cucurbita maxima]1.36e-17194.59Show/hide
Query:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
        MAKKATP T+T YSPSPT HKTRPP+FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
Subjt:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT

Query:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG
        TFSTPVRGQGSENKEFSSMLHK+LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENYQDG
Subjt:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG

Query:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE
        SLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLV IMRSCLKESAAT+SEE
Subjt:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE

XP_038900607.1 exosome complex component RRP41-like isoform X1 [Benincasa hispida]4.73e-17295.37Show/hide
Query:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
        MAKKATPTTTT YSPSPT+ KTRPP+FRT DV+WVR DGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
Subjt:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT

Query:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG
        TFSTPVRGQGSENKEFSSMLHK+LEGAI+LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENYQDG
Subjt:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG

Query:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE
        SLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLVEIMRSCLKESAATISEE
Subjt:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE

TrEMBL top hitse value%identityAlignment
A0A0A0KEK6 Uncharacterized protein3.3e-13697.3Show/hide
Query:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
        MAKKATP TTTTYSPSPTVHKTRP LFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
Subjt:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT

Query:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG
        TFSTPVRGQGSENK+FSSMLHKSLEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLID +LEEENYQDG
Subjt:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG

Query:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE
        SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESA TISEE
Subjt:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE

A0A1S3CKF3 exosome complex component RRP41-like2.6e-141100Show/hide
Query:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
        MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
Subjt:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT

Query:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG
        TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG
Subjt:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG

Query:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE
        SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE
Subjt:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE

A0A6J1CHT0 exosome complex component RRP41-like1.4e-13193.05Show/hide
Query:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
        MAKKATP  TTTYSPSPT+HKTRPP+FR+D+ +WVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
Subjt:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT

Query:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG
        TF+TPVRGQGSENKEFSSMLHK+LEGAIILETFPKTTVD+FALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP+LEEENYQDG
Subjt:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG

Query:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE
        SLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLV+IMRSCLKES ATIS++
Subjt:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE

A0A6J1FYV1 exosome complex component RRP41-like2.0e-13394.59Show/hide
Query:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
        MAKKATP  TTTYSPSPT HKTRPP+FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
Subjt:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT

Query:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG
        TFSTPVRGQGSENKEFSSMLHK+LEGAII ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENYQDG
Subjt:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG

Query:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE
        SLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLV IMRSCLKESAAT+SEE
Subjt:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE

A0A6J1JDA9 exosome complex component RRP41-like2.0e-13394.59Show/hide
Query:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
        MAKKATP  T+TYSPSPT HKTRPP+FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
Subjt:  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT

Query:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG
        TFSTPVRGQGSENKEFSSMLHK+LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENYQDG
Subjt:  TFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDG

Query:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE
        SLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLV IMRSCLKESAAT+SEE
Subjt:  SLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE

SwissProt top hitse value%identityAlignment
A2RVK7 Exosome complex component RRP41-like2.5e-10474.3Show/hide
Query:  TTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ
        T TYSP   V ++R P+F+  D++W RPDGRGFHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT F++P  GQ
Subjt:  TTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ

Query:  GSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPS
        G+++KE+SSMLHK+LEG I++ETFPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC GK+L+IDP+ EEE  +DGS M+TCMPS
Subjt:  GSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPS

Query:  RYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISE
        RYE+TQLTITGEWTT  INE MQLCLDAS KL EIMR CLK+SA+   E
Subjt:  RYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISE

B6YSI2 Exosome complex component Rrp412.9e-2833.2Show/hide
Query:  RPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS
        +P   +  D N  R DGR  ++ RP     G +  A GSAY E+G  K++ +V+GPRE   K +   D   L    +   FS   R   G    + E S 
Subjt:  RPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS

Query:  MLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTI
        ++  +LE A+ILE FP+T +D+F  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+NY +  + +  MP + ++T L +
Subjt:  MLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTI

Query:  TGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE
         G  T  +  E ++L +  +  + +  R  LKE    I+EE
Subjt:  TGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE

O59223 Exosome complex component Rrp411.7e-2833.61Show/hide
Query:  RPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS
        +P   +  D N  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE   K +   D   L    +   FS   R   G    + E S 
Subjt:  RPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS

Query:  MLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTI
        ++  +LE A+ILE FP+T++DVF  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+NY +  + +  MP + ++T L +
Subjt:  MLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTI

Query:  TGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE
         G  T  +  E ++L +  +  + +  R  LKE    I++E
Subjt:  TGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE

Q6P0I8 Exosome complex component MTR32.8e-3137.84Show/hide
Query:  RGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFSTPVRG---QGSENKEFSSMLHKSLEGAIILETFPK
        RG    RP F R G V+ A GSAY E GNTK+I SV+GP+E+ ++       GRL C      FS   RG   QGSE ++ S+ L +SL   + L  +P+
Subjt:  RGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFSTPVRG---QGSENKEFSSMLHKSLEGAIILETFPK

Query:  TTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEE------ENYQD--GSLMITCMPSRYEVTQLTITGEWTTSKI
        + +DV  +VLE+ GS L   ++CAS+ALADAGI +YD+V   ++   G   L+DP   E      E Y D  G + +  +P+  +V+ L   GE     +
Subjt:  TTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEE------ENYQD--GSLMITCMPSRYEVTQLTITGEWTTSKI

Query:  NEGMQLCLDASCKLVEIMRSCL
         E M+ C+D   KL  +++  L
Subjt:  NEGMQLCLDASCKLVEIMRSCL

Q8U0L9 Exosome complex component Rrp419.9e-2934.02Show/hide
Query:  RPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS
        +P   +  D N  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE   K +   D   L    +   FS   R   G    + E S 
Subjt:  RPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS

Query:  MLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTI
        ++  +LE A+ILE FP+T +DVF  VL++        I+ ASLALADAGI + DLVA+ S       +++D   EE+NY +  + +  MP + ++T L +
Subjt:  MLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTI

Query:  TGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE
         G  T  +  E ++L +  +  + +  R  LKE    I++E
Subjt:  TGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein8.7e-1231.29Show/hide
Query:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKSLEGAIILETFP
        R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++         +     P  GQ G   KE+  +L ++++   +L   P
Subjt:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKSLEGAIILETFP

Query:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPILEEE
         TT  V   V+   GS LP  I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Subjt:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPILEEE

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein8.7e-1231.29Show/hide
Query:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKSLEGAIILETFP
        R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++         +     P  GQ G   KE+  +L ++++   +L   P
Subjt:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKSLEGAIILETFP

Query:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPILEEE
         TT  V   V+   GS LP  I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Subjt:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPILEEE

AT3G61620.1 3'-5'-exoribonuclease family protein2.7e-2130.49Show/hide
Query:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKSLEGAII
        +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   + C  S   FST  R +      + E S ++ +++E  I+
Subjt:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKSLEGAII

Query:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINE
         E  P + +D+F  VL++ G      I+ A+LALADAGI + DL  S S        L+D    E++     + +  +P   +V+ L +  +        
Subjt:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINE

Query:  GMQLCLDASCKLVEIMRSCLKES
           L  +    + E +R  L+E+
Subjt:  GMQLCLDASCKLVEIMRSCLKES

AT3G61620.2 3'-5'-exoribonuclease family protein2.7e-2130.49Show/hide
Query:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKSLEGAII
        +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   + C  S   FST  R +      + E S ++ +++E  I+
Subjt:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKSLEGAII

Query:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINE
         E  P + +D+F  VL++ G      I+ A+LALADAGI + DL  S S        L+D    E++     + +  +P   +V+ L +  +        
Subjt:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINE

Query:  GMQLCLDASCKLVEIMRSCLKES
           L  +    + E +R  L+E+
Subjt:  GMQLCLDASCKLVEIMRSCLKES

AT4G27490.1 3'-5'-exoribonuclease family protein1.8e-10574.3Show/hide
Query:  TTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ
        T TYSP   V ++R P+F+  D++W RPDGRGFHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT F++P  GQ
Subjt:  TTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ

Query:  GSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPS
        G+++KE+SSMLHK+LEG I++ETFPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC GK+L+IDP+ EEE  +DGS M+TCMPS
Subjt:  GSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPS

Query:  RYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISE
        RYE+TQLTITGEWTT  INE MQLCLDAS KL EIMR CLK+SA+   E
Subjt:  RYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAAAAAGCGACACCAACTACCACCACAACGTATTCTCCGTCTCCTACTGTCCACAAAACCAGGCCACCCCTCTTCAGAACCGACGACGTCAACTGGGTTCGCCC
CGATGGCCGTGGCTTCCACCAATGCCGGCCTGCTTTTTTCAGGACTGGAGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAATTCGGTAATACCAAGGTCATTGTTT
CTGTATTTGGCCCTAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGA
TCGGAAAACAAGGAGTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAAACATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTAGAATC
TGGAGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCTGATGCTGGAATTATGCTTTATGATCTCGTTGCCTCGGTTTCTGTGAGCTGCTTTGGCA
AGAATCTTCTTATTGATCCTATATTGGAAGAAGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACAATTACAGGC
GAATGGACAACTTCTAAAATTAATGAGGGTATGCAACTTTGCCTTGATGCTTCATGTAAGCTTGTGGAGATCATGAGATCATGCTTGAAGGAATCGGCCGCCACCATTTC
AGAGGAATGA
mRNA sequenceShow/hide mRNA sequence
GAATTAACCCCTTGTCTGGCGCCCTCACCGGCTTCCAAGGTTCAATTTCCCAATCGTTGGCTCCTCGGTCTCTACCAAAACACACATACTCCTTTCAATCTCTTTGAACT
CTTAATAGAAACCGATCGATTCTGGGTTTTGTGTTCATTACCTTCACGGCCTCAGGAAATTTGTGGCGGAGCTTTCTAACTTGTCATCGGAGTCATTCATTGAGGTTCCG
AATGGCCAAAAAAGCGACACCAACTACCACCACAACGTATTCTCCGTCTCCTACTGTCCACAAAACCAGGCCACCCCTCTTCAGAACCGACGACGTCAACTGGGTTCGCC
CCGATGGCCGTGGCTTCCACCAATGCCGGCCTGCTTTTTTCAGGACTGGAGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAATTCGGTAATACCAAGGTCATTGTT
TCTGTATTTGGCCCTAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGG
ATCGGAAAACAAGGAGTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAAACATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTAGAAT
CTGGAGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCTGATGCTGGAATTATGCTTTATGATCTCGTTGCCTCGGTTTCTGTGAGCTGCTTTGGC
AAGAATCTTCTTATTGATCCTATATTGGAAGAAGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACAATTACAGG
CGAATGGACAACTTCTAAAATTAATGAGGGTATGCAACTTTGCCTTGATGCTTCATGTAAGCTTGTGGAGATCATGAGATCATGCTTGAAGGAATCGGCCGCCACCATTT
CAGAGGAATGAACAAAAAGAGTAATGTCTAATGTTATCTCTTTTTAGTTTTAATAGAGAAATCTCAACATCCCTTCCCCTTCCATCCCCAATTTTGATGAGAATGAAAAA
TATGTAAAATCTTTGGAAAATGGTTGATTTGAATTTTGCATAAAAGTAAAAGGTAGCAGAGAAGTTTTCATTTGGTTGGTGGCTGACCACAGAAAAACAATTCCAAT
Protein sequenceShow/hide protein sequence
MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQG
SENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITG
EWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE