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IVF0012227 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012227
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr08:25790017..25790619
RNA-Seq ExpressionIVF0012227
SyntenyIVF0012227
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043564.1 retrotransposon protein [Cucumis melo var. makuwa]2.64e-1080.65Show/hide
Query:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKA
        MRGPSCSGFGWNE+FQCI+A+R+LFD+WVK+
Subjt:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKA

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]7.92e-1535.14Show/hide
Query:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKAFYTNHFHIMMIYPM---------------------------------SSTKIGQQEHVQRPLL----IC
        MRGPSCSGFGWNEEFQCI+A+R+LFDSWVK+       +   +P                                   +  +G       P +    + 
Subjt:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKAFYTNHFHIMMIYPM---------------------------------SSTKIGQQEHVQRPLL----IC

Query:  LEHVQVKQVREEIVQVEVR-GNE---AIADWPKEKRATEVELRAEVVK
        +   ++  +R E+++  +  GNE   AIADW KEKRA E+E+RA+VVK
Subjt:  LEHVQVKQVREEIVQVEVR-GNE---AIADWPKEKRATEVELRAEVVK

KGN66636.1 hypothetical protein Csa_007482 [Cucumis sativus]4.37e-3156.9Show/hide
Query:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKAFYTNHFHIMMIYPMSSTKIGQQEHVQRPLLICLEHVQ---------VKQVREEIVQVEVRGNEAIADWP
        MRGPSCS FGWNEE+QCI+ ++ELFDSWVK              MSS KIG QEH QR LL+ ++  Q         V QV+EEIV VEV+GN+AI  WP
Subjt:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKAFYTNHFHIMMIYPMSSTKIGQQEHVQRPLLICLEHVQ---------VKQVREEIVQVEVRGNEAIADWP

Query:  KEKRATEVELRAEVVK
        KE+RAT+VEL  EVVK
Subjt:  KEKRATEVELRAEVVK

TYK19779.1 retrotransposon protein [Cucumis melo var. makuwa]7.89e-1541.18Show/hide
Query:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKAFYTNH--FHIMMIYPMSSTKIGQQEHVQRPLLICLEHVQVKQVR-------------EEIVQVEVRGNE
        +RGPSCSGFGWNE+FQCI+A+R+LFD+WVK+  T     H    Y    + +  ++      L     V    +              ++I  +  +G  
Subjt:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKAFYTNH--FHIMMIYPMSSTKIGQQEHVQRPLLICLEHVQVKQVR-------------EEIVQVEVRGNE

Query:  AIADWPKEKRATEVELRAE
        AIADWPKEKRATEVELR E
Subjt:  AIADWPKEKRATEVELRAE

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]6.14e-1333.53Show/hide
Query:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKA-------------FYTNHFHIM----------MIYPMSSTKIGQQEHVQRPL-----------------
        MRGPSCSGFGWNEEFQCI+A+R+LFDSW+K+             +Y +  ++             +P   + +    +   PL                 
Subjt:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKA-------------FYTNHFHIM----------MIYPMSSTKIGQQEHVQRPL-----------------

Query:  -----------------LICLEHVQVKQVREEIVQVEVR------GNE---AIADWPKEKRATEVELRAEVVK
                           C    + K+  E    VEV       GNE   AIADWPKEKRA EVE+RA+VVK
Subjt:  -----------------LICLEHVQVKQVREEIVQVEVR------GNE---AIADWPKEKRATEVELRAEVVK

TrEMBL top hitse value%identityAlignment
A0A0A0M343 Uncharacterized protein6.0e-2356.9Show/hide
Query:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKAFYTNHFHIMMIYPMSSTKIGQQEHVQRPLLICLEHVQ---------VKQVREEIVQVEVRGNEAIADWP
        MRGPSCS FGWNEE+QCI+ ++ELFDSWVK              MSS KIG QEH QR LL+ ++  Q         V QV+EEIV VEV+GN+AI  WP
Subjt:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKAFYTNHFHIMMIYPMSSTKIGQQEHVQRPLLICLEHVQ---------VKQVREEIVQVEVRGNEAIADWP

Query:  KEKRATEVELRAEVVK
        KE+RAT+VEL  EVVK
Subjt:  KEKRATEVELRAEVVK

A0A1S3B4L3 uncharacterized protein LOC1034859535.8e-1033.53Show/hide
Query:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKA-------------FYTNHFHIM-------------------------MIYPMSS-------TKIGQQEH
        MRGPSCSGFGWNEEFQCI+A+R+LFDSW+K+             +Y +  ++                             P+         T   Q  H
Subjt:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKA-------------FYTNHFHIM-------------------------MIYPMSS-------TKIGQQEH

Query:  VQRPLLICLEHVQVKQVR------------------EEIVQVEVRGNE---AIADWPKEKRATEVELRAEVVK
        +    +  +   Q  + R                  E I  V   GNE   AIADWPKEKRA EVE+RA+VVK
Subjt:  VQRPLLICLEHVQVKQVR------------------EEIVQVEVRGNE---AIADWPKEKRATEVELRAEVVK

A0A5A7U0H7 Retrotransposon protein5.8e-1033.53Show/hide
Query:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKA-------------FYTNHFHIM-------------------------MIYPMSS-------TKIGQQEH
        MRGPSCSGFGWNEEFQCI+A+R+LFDSW+K+             +Y +  ++                             P+         T   Q  H
Subjt:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKA-------------FYTNHFHIM-------------------------MIYPMSS-------TKIGQQEH

Query:  VQRPLLICLEHVQVKQVR------------------EEIVQVEVRGNE---AIADWPKEKRATEVELRAEVVK
        +    +  +   Q  + R                  E I  V   GNE   AIADWPKEKRA EVE+RA+VVK
Subjt:  VQRPLLICLEHVQVKQVR------------------EEIVQVEVRGNE---AIADWPKEKRATEVELRAEVVK

A0A5D3D8J6 Retrotransposon protein1.1e-1141.18Show/hide
Query:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKAFYTNH--FHIMMIYPMSSTKIGQQEHVQRPLLICLEHVQVKQVR-------------EEIVQVEVRGNE
        +RGPSCSGFGWNE+FQCI+A+R+LFD+WVK+  T     H    Y    + +  ++      L     V    +              ++I  +  +G  
Subjt:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKAFYTNH--FHIMMIYPMSSTKIGQQEHVQRPLLICLEHVQVKQVR-------------EEIVQVEVRGNE

Query:  AIADWPKEKRATEVELRAE
        AIADWPKEKRATEVELR E
Subjt:  AIADWPKEKRATEVELRAE

A0A5D3DG22 Retrotransposon protein8.1e-1235.81Show/hide
Query:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKAFYTNHFHIMMIYPM---------------------------------SSTKIGQQEHVQRPLL----IC
        MRGPSCSGFGWNEEFQCI+A+R+LFDSWVK+       +   +P                                   +  +G       P +    + 
Subjt:  MRGPSCSGFGWNEEFQCIVAKRELFDSWVKAFYTNHFHIMMIYPM---------------------------------SSTKIGQQEHVQRPLL----IC

Query:  LEHVQVKQVREEIVQ-VEVRGNE---AIADWPKEKRATEVELRAEVVK
        +   ++  +R E+++ V   GNE   AIADW KEKRA E+E+RA+VVK
Subjt:  LEHVQVKQVREEIVQ-VEVRGNE---AIADWPKEKRATEVELRAEVVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGGCCATCGTGTAGTGGCTTTGGATGGAATGAAGAATTCCAATGCATTGTCGCAAAACGGGAGTTGTTTGATAGTTGGGTAAAGGCCTTCTACACAAATCATTT
CCATATTATGATGATCTATCCTATGTCTTCGACAAAGATCGGGCAACAGGAGCACGTTCAGAGACCGTTGCTGATATGTTTGGAACACGTGCAAGTCAAGCAAGTGAGAG
AAGAAATTGTTCAAGTGGAAGTAAGAGGAAACGAGGCAATTGCAGATTGGCCAAAAGAGAAACGCGCAACAGAGGTTGAATTGCGTGCTGAAGTCGTGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGGCCATCGTGTAGTGGCTTTGGATGGAATGAAGAATTCCAATGCATTGTCGCAAAACGGGAGTTGTTTGATAGTTGGGTAAAGGCCTTCTACACAAATCATTT
CCATATTATGATGATCTATCCTATGTCTTCGACAAAGATCGGGCAACAGGAGCACGTTCAGAGACCGTTGCTGATATGTTTGGAACACGTGCAAGTCAAGCAAGTGAGAG
AAGAAATTGTTCAAGTGGAAGTAAGAGGAAACGAGGCAATTGCAGATTGGCCAAAAGAGAAACGCGCAACAGAGGTTGAATTGCGTGCTGAAGTCGTGAAATAG
Protein sequenceShow/hide protein sequence
MRGPSCSGFGWNEEFQCIVAKRELFDSWVKAFYTNHFHIMMIYPMSSTKIGQQEHVQRPLLICLEHVQVKQVREEIVQVEVRGNEAIADWPKEKRATEVELRAEVVK