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IVF0012241 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012241
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr06:14679824..14680251
RNA-Seq ExpressionIVF0012241
SyntenyIVF0012241
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035974.1 hypothetical protein E6C27_scaffold56G001830 [Cucumis melo var. makuwa]1.98e-3754.93Show/hide
Query:  MTLIDSE-RRNQNFV-----------VSIMARSDYVQLVNATLRVKKSLGVKKPSSELNEEGEKGSVRNKKAKTIVSQGSHWISDKKSQCKDCERNHTRM
        M LIDSE +R + FV           V  + R+DY QLV+ATLRV+KS+GVK  SS ++ E EKGS+ NKK KTIVSQ S W SDKK +C +C + H+  
Subjt:  MTLIDSE-RRNQNFV-----------VSIMARSDYVQLVNATLRVKKSLGVKKPSSELNEEGEKGSVRNKKAKTIVSQGSHWISDKKSQCKDCERNHTRM

Query:  CRRKNITCSLCGKKGHYKNECQNKMKIDEEGSMQRQVASHSV
        CRR++ITC  C KK HYK+E Q+K K DEE S Q  VASHSV
Subjt:  CRRKNITCSLCGKKGHYKNECQNKMKIDEEGSMQRQVASHSV

KAA0056429.1 hypothetical protein E6C27_scaffold186G001860 [Cucumis melo var. makuwa]3.00e-2656.52Show/hide
Query:  NATLRVKKSLGVKKPSSELNEEGEKGSVRN-KKAKTIVSQGSHWISDKKSQCKDCERNHTRMCRRKNITCSLCGKKGHYKNECQNKMKIDEE
        NA L+V+KSL +K+PSSEL+ E E+ ++RN KK+KT++SQGS W  D+K +C D  R H R+CRRK+ITC   G+KGHYK+E Q+K   DEE
Subjt:  NATLRVKKSLGVKKPSSELNEEGEKGSVRN-KKAKTIVSQGSHWISDKKSQCKDCERNHTRMCRRKNITCSLCGKKGHYKNECQNKMKIDEE

KAA0062421.1 hypothetical protein E6C27_scaffold154G002300 [Cucumis melo var. makuwa]8.90e-2656.48Show/hide
Query:  MTLIDSE-RRNQNFV-----------VSIMARSDYVQLVNATLRVKKSLGVKKPSSELNEEGEKGSVRNKKAKTIVSQGSHWISDKKSQCKDCERNHTRM
        MTLID E  R + FV           V I+ RSDY  LV+  L V+KSLG+K+PS EL+EE E GSV  KKAKTIVSQGSHW SD+K QC+DC R H  +
Subjt:  MTLIDSE-RRNQNFV-----------VSIMARSDYVQLVNATLRVKKSLGVKKPSSELNEEGEKGSVRNKKAKTIVSQGSHWISDKKSQCKDCERNHTRM

Query:  CRRKNITC
        CRR++I C
Subjt:  CRRKNITC

KAE8649688.1 hypothetical protein Csa_012948, partial [Cucumis sativus]1.12e-0754.9Show/hide
Query:  VVSIMARSDYVQLVNATLRVKKSLGVKKPSSELNEEGEKGSVRNKKAKTIV
        +V I+ RSDY QLV+A LRV+KSLG+K+ SS+  E+GE+GS +NKK+  ++
Subjt:  VVSIMARSDYVQLVNATLRVKKSLGVKKPSSELNEEGEKGSVRNKKAKTIV

KGN57517.1 hypothetical protein Csa_010516 [Cucumis sativus]6.12e-0540Show/hide
Query:  QNFVVSIMARSDYVQLVNATLRVKKSLGVKKPSSELNEEGEKGSVRN--KKAKTIVSQGSHWISDKKSQC
        +  V +I+ R DY +LV+ TL ++K+L  K+PS  ++ EGEK SV +  K +K   S+GS W  D +  C
Subjt:  QNFVVSIMARSDYVQLVNATLRVKKSLGVKKPSSELNEEGEKGSVRN--KKAKTIVSQGSHWISDKKSQC

TrEMBL top hitse value%identityAlignment
A0A0A0KYX4 Uncharacterized protein3.4e-0459.57Show/hide
Query:  VVSIMARSDYVQLVNATLRVKKSLGVKKPSSELNEEGEKGSVRNKKA
        +V I+ RSDY QLV+A LRV+KSLG+K+ SS+  E+GE+GS +NKK+
Subjt:  VVSIMARSDYVQLVNATLRVKKSLGVKKPSSELNEEGEKGSVRNKKA

A0A5D3DS44 Uncharacterized protein1.4e-1854.63Show/hide
Query:  MTLIDSERRN------------QNFVVSIMARSDYVQLVNATLRVKKSLGVKKPSSELNEEGEKGSVRNKKAKTIVSQGSHWISDKKSQCKDCERNHTRM
        MTLID E               +  VV I+ RSDY  LV+  L V+KSLG+K+PS EL+EE E GSV  KKAKTIVSQGSHW SD+K QC+DC R H  +
Subjt:  MTLIDSERRN------------QNFVVSIMARSDYVQLVNATLRVKKSLGVKKPSSELNEEGEKGSVRNKKAKTIVSQGSHWISDKKSQCKDCERNHTRM

Query:  CRRKNITC
        CRR++I C
Subjt:  CRRKNITC

A0A5D3DZA3 Uncharacterized protein6.3e-1956.52Show/hide
Query:  NATLRVKKSLGVKKPSSELNEEGEKGSVRN-KKAKTIVSQGSHWISDKKSQCKDCERNHTRMCRRKNITCSLCGKKGHYKNECQNKMKIDEE
        NA L+V+KSL +K+PSSEL+ E E+ ++RN KK+KT++SQGS W  D+K +C D  R H R+CRRK+ITC   G+KGHYK+E Q+K   DEE
Subjt:  NATLRVKKSLGVKKPSSELNEEGEKGSVRN-KKAKTIVSQGSHWISDKKSQCKDCERNHTRMCRRKNITCSLCGKKGHYKNECQNKMKIDEE

A0A5D3E3Q3 Retrotrans_gag domain-containing protein9.8e-2854.93Show/hide
Query:  MTLIDSE-RRNQNF-----------VVSIMARSDYVQLVNATLRVKKSLGVKKPSSELNEEGEKGSVRNKKAKTIVSQGSHWISDKKSQCKDCERNHTRM
        M LIDSE +R + F           VV  + R+DY QLV+ATLRV+KS+GVK  SS ++ E EKGS+ NKK KTIVSQ S W SDKK +C +C + H+  
Subjt:  MTLIDSE-RRNQNF-----------VVSIMARSDYVQLVNATLRVKKSLGVKKPSSELNEEGEKGSVRNKKAKTIVSQGSHWISDKKSQCKDCERNHTRM

Query:  CRRKNITCSLCGKKGHYKNECQNKMKIDEEGSMQRQVASHSV
        CRR++ITC  C KK HYK+E Q+K K DEE S Q  VASHSV
Subjt:  CRRKNITCSLCGKKGHYKNECQNKMKIDEEGSMQRQVASHSV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGCTAATTGATTCAGAAAGGAGAAACCAGAACTTTGTAGTATCTATTATGGCAAGAAGTGACTATGTGCAATTAGTAAATGCAACTCTACGAGTAAAGAAAAGTCT
GGGAGTAAAAAAACCAAGTTCTGAATTAAACGAAGAAGGAGAAAAAGGAAGCGTCAGAAATAAGAAGGCTAAGACCATTGTTAGTCAAGGATCGCATTGGATTAGCGATA
AAAAATCTCAATGTAAAGATTGTGAAAGAAATCATACAAGAATGTGTAGAAGGAAAAATATTACTTGCTCCCTGTGTGGCAAGAAAGGGCATTACAAGAATGAATGCCAA
AATAAGATGAAGATAGACGAAGAAGGATCAATGCAAAGACAAGTGGCCTCTCACTCAGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGACGCTAATTGATTCAGAAAGGAGAAACCAGAACTTTGTAGTATCTATTATGGCAAGAAGTGACTATGTGCAATTAGTAAATGCAACTCTACGAGTAAAGAAAAGTCT
GGGAGTAAAAAAACCAAGTTCTGAATTAAACGAAGAAGGAGAAAAAGGAAGCGTCAGAAATAAGAAGGCTAAGACCATTGTTAGTCAAGGATCGCATTGGATTAGCGATA
AAAAATCTCAATGTAAAGATTGTGAAAGAAATCATACAAGAATGTGTAGAAGGAAAAATATTACTTGCTCCCTGTGTGGCAAGAAAGGGCATTACAAGAATGAATGCCAA
AATAAGATGAAGATAGACGAAGAAGGATCAATGCAAAGACAAGTGGCCTCTCACTCAGTATAA
Protein sequenceShow/hide protein sequence
MTLIDSERRNQNFVVSIMARSDYVQLVNATLRVKKSLGVKKPSSELNEEGEKGSVRNKKAKTIVSQGSHWISDKKSQCKDCERNHTRMCRRKNITCSLCGKKGHYKNECQ
NKMKIDEEGSMQRQVASHSV