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IVF0012245 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012245
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGeranylgeranyl transferase type-2 subunit beta
Genome locationchr01:2769438..2770816
RNA-Seq ExpressionIVF0012245
SyntenyIVF0012245
Gene Ontology termsGO:0018344 - protein geranylgeranylation (biological process)
GO:0005968 - Rab-protein geranylgeranyltransferase complex (cellular component)
GO:0004663 - Rab geranylgeranyltransferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001330 - PFTB repeat
IPR008930 - Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
IPR045089 - Prenyltransferase subunit beta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135990.1 geranylgeranyl transferase type-2 subunit beta 1-like [Momordica charantia]1.03e-4088.1Show/hide
Query:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        GFSGN GHD HILYTLSAVQVLALFD+L+VLDVDKVT+YI GLQNEDGSFS D+W EVDSRFSYIAIS LSLLHQLEKINVEKA
Subjt:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

XP_022954124.1 geranylgeranyl transferase type-2 subunit beta 1-like [Cucurbita moschata]1.11e-4086.9Show/hide
Query:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        GF+GN GHD HILYTLSAVQVLALFD L+VLDVDKVTDY+VGLQNEDGSFS D+W EVDSRFSYIAIS LSLLHQL+KINVEKA
Subjt:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

XP_022991640.1 geranylgeranyl transferase type-2 subunit beta 1-like [Cucurbita maxima]1.11e-4086.9Show/hide
Query:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        GF+GN GHD HILYTLSAVQVLALFDKL+VLDVDKVTDY+VGLQNEDGSFS D+W EVDSRFSYIAI  LSLLHQL+KINVEKA
Subjt:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

XP_038887307.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida]7.30e-4188.1Show/hide
Query:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        GFSGN GHD HILYTLSAVQVLALFDKL+V+DVDKVTDYIVGLQNEDGSFS D+W EVDSRFSYIA+S LSLL+QLEKINVEKA
Subjt:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

XP_038887310.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hispida]3.85e-4188.1Show/hide
Query:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        GFSGN GHD HILYTLSAVQVLALFDKL+V+DVDKVTDYIVGLQNEDGSFS D+W EVDSRFSYIA+S LSLL+QLEKINVEKA
Subjt:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

TrEMBL top hitse value%identityAlignment
A0A0A0K723 Geranylgeranyl transferase type-2 subunit beta2.5e-3286.9Show/hide
Query:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        GFSGN GHD HILYTLSAVQVLALFDKL+VLDVDKVT+Y+VGLQNEDGSFS D+W EVDSRFSYIAI  LSLLHQL+KINVEKA
Subjt:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

A0A1S3CDW8 Geranylgeranyl transferase type-2 subunit beta5.6e-3285.71Show/hide
Query:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        GF+GN GHD HILYTLSAVQVLALFDKL+VLDVDKVT+Y+VGLQNEDGSFS D+W EVDSRFSYIAI  LSLLHQL+KINVEKA
Subjt:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

A0A6J1C294 Geranylgeranyl transferase type-2 subunit beta1.5e-3288.1Show/hide
Query:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        GFSGN GHD HILYTLSAVQVLALFD+L+VLDVDKVT+YI GLQNEDGSFS D+W EVDSRFSYIAIS LSLLHQLEKINVEKA
Subjt:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

A0A6J1GS02 Geranylgeranyl transferase type-2 subunit beta1.5e-3286.9Show/hide
Query:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        GF+GN GHD HILYTLSAVQVLALFD L+VLDVDKVTDY+VGLQNEDGSFS D+W EVDSRFSYIAIS LSLLHQL+KINVEKA
Subjt:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

A0A6J1JME6 Geranylgeranyl transferase type-2 subunit beta1.5e-3286.9Show/hide
Query:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        GF+GN GHD HILYTLSAVQVLALFDKL+VLDVDKVTDY+VGLQNEDGSFS D+W EVDSRFSYIAI  LSLLHQL+KINVEKA
Subjt:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

SwissProt top hitse value%identityAlignment
B0G172 Probable geranylgeranyl transferase type-2 subunit beta7.1e-2454.63Show/hide
Query:  SFKKLSKTHFGVWDWVC-----GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEK
        S  KL K     W   C     GF GNT HD H+L TLSAVQ+L  +D L+ +D++ V DY+V LQ EDGSF  D W EVD+RFSY AI  LSLL  L+K
Subjt:  SFKKLSKTHFGVWDWVC-----GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEK

Query:  INVEKAFE
        IN EKA E
Subjt:  INVEKAFE

P53611 Geranylgeranyl transferase type-2 subunit beta2.2e-2550.91Show/hide
Query:  IKRTKFLSFKKLSKTHFGVWDWVCGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQL
        + R + L+F K  +   G      G S + GHD H+LYTLSAVQ+L L+D +NV+DV+KV +Y+ GLQ EDGSF+ D+W E+D+RFS+ A++ L+LL +L
Subjt:  IKRTKFLSFKKLSKTHFGVWDWVCGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQL

Query:  EKINVEKAFE
        + INVEKA E
Subjt:  EKINVEKAFE

Q5E9B3 Geranylgeranyl transferase type-2 subunit beta1.4e-2449.09Show/hide
Query:  IKRTKFLSFKKLSKTHFGVWDWVCGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQL
        + R + L+F K  +   G      G S + GHD H+LYTLSAVQ+L L+D +NV+D++KV +Y+  LQ EDGSF+ D+W E+D+RFS+ A++ L+LL +L
Subjt:  IKRTKFLSFKKLSKTHFGVWDWVCGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQL

Query:  EKINVEKAFE
        + INVEKA E
Subjt:  EKINVEKAFE

Q84J75 Geranylgeranyl transferase type-2 subunit beta 11.5e-2972.62Show/hide
Query:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        GF+GNTGHD HILYTLSAVQ+LALFDK+N+LD+ KV+ Y+  LQNEDGSFS D+W E+D+RFSYIAI  LS+L  L+KINVEKA
Subjt:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

Q9LHL5 Geranylgeranyl transferase type-2 subunit beta 22.7e-3174.42Show/hide
Query:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE
        GF+GNTGHD H+LYTLSAVQ+LALFDKLN+LDV+KV++YI GLQNEDGSFS D+W EVD+RFSYIAI  LS+L  L+KINV+KA +
Subjt:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE

Arabidopsis top hitse value%identityAlignment
AT3G12070.1 RAB geranylgeranyl transferase beta subunit 21.9e-3274.42Show/hide
Query:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE
        GF+GNTGHD H+LYTLSAVQ+LALFDKLN+LDV+KV++YI GLQNEDGSFS D+W EVD+RFSYIAI  LS+L  L+KINV+KA +
Subjt:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE

AT3G12070.2 RAB geranylgeranyl transferase beta subunit 21.9e-3274.42Show/hide
Query:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE
        GF+GNTGHD H+LYTLSAVQ+LALFDKLN+LDV+KV++YI GLQNEDGSFS D+W EVD+RFSYIAI  LS+L  L+KINV+KA +
Subjt:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE

AT5G12210.1 RAB geranylgeranyl transferase beta subunit 11.0e-3072.62Show/hide
Query:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        GF+GNTGHD HILYTLSAVQ+LALFDK+N+LD+ KV+ Y+  LQNEDGSFS D+W E+D+RFSYIAI  LS+L  L+KINVEKA
Subjt:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA

AT5G12210.2 RAB geranylgeranyl transferase beta subunit 11.0e-3072.62Show/hide
Query:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA
        GF+GNTGHD HILYTLSAVQ+LALFDK+N+LD+ KV+ Y+  LQNEDGSFS D+W E+D+RFSYIAI  LS+L  L+KINVEKA
Subjt:  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATGACCGATATCAAATGGAGGAAGGAAAATTGAGAGAAGAAAAGGAAGAGGGAAAAGGAAAATTAAGAGTAATTTTGGCCAATGACGATGAAATCAAGAGGAC
AAAATTCTTAAGTTTCAAAAAGTTGAGCAAAACCCATTTTGGAGTTTGGGATTGGGTCTGTGGTTTTTCTGGCAACACTGGTCATGATCAGCACATACTTTACACCCTTA
GTGCCGTACAAGTCTTGGCCCTCTTTGACAAGTTGAATGTTTTAGATGTTGATAAGGTGACAGATTATATTGTTGGTTTGCAAAATGAAGATGGTTCCTTCTCAAGAGAC
GTTTGGGATGAAGTAGATTCAAGGTTTTCTTATATTGCAATATCTCATCTATCGTTATTACATCAACTGGAGAAGATCAATGTTGAGAAGGCTTTCGAACTACATTCTTA
G
mRNA sequenceShow/hide mRNA sequence
ATGGAGAATGACCGATATCAAATGGAGGAAGGAAAATTGAGAGAAGAAAAGGAAGAGGGAAAAGGAAAATTAAGAGTAATTTTGGCCAATGACGATGAAATCAAGAGGAC
AAAATTCTTAAGTTTCAAAAAGTTGAGCAAAACCCATTTTGGAGTTTGGGATTGGGTCTGTGGTTTTTCTGGCAACACTGGTCATGATCAGCACATACTTTACACCCTTA
GTGCCGTACAAGTCTTGGCCCTCTTTGACAAGTTGAATGTTTTAGATGTTGATAAGGTGACAGATTATATTGTTGGTTTGCAAAATGAAGATGGTTCCTTCTCAAGAGAC
GTTTGGGATGAAGTAGATTCAAGGTTTTCTTATATTGCAATATCTCATCTATCGTTATTACATCAACTGGAGAAGATCAATGTTGAGAAGGCTTTCGAACTACATTCTTA
G
Protein sequenceShow/hide protein sequence
MENDRYQMEEGKLREEKEEGKGKLRVILANDDEIKRTKFLSFKKLSKTHFGVWDWVCGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRD
VWDEVDSRFSYIAISHLSLLHQLEKINVEKAFELHS