CuGenDBv2

Gene ID	IVF0012264
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Genome location	chr01:7839691..7840436
RNA-Seq Expression	IVF0012264
Synteny	IVF0012264
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]

1.22e-99

71.62

Show/hide

Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM
        MRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDA AADAMPDTDFPP YSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRILMRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVSDHMKYPYCTLILQENQ
        AFLEV DHMKYPYC+LILQENQ
Subjt:  AFLEVSDHMKYPYCTLILQENQ

KAA0038122.1 retrotransposon protein [Cucumis melo var. makuwa]

2.45e-99

71.62

Show/hide

Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM
        MRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDA AADAMPDTDFPP YSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRILMRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVSDHMKYPYCTLILQENQ
        AFLEV DHMKYPYC+LILQENQ
Subjt:  AFLEVSDHMKYPYCTLILQENQ

KAA0048362.1 retrotransposon protein [Cucumis melo var. makuwa]

1.07e-99

71.62

Show/hide

Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM
        MRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDA AADAMPDTDFPP YSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRILMRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVSDHMKYPYCTLILQENQ
        AFLEV DHMKYPYC+LILQENQ
Subjt:  AFLEVSDHMKYPYCTLILQENQ

KAA0051058.1 retrotransposon protein [Cucumis melo var. makuwa]

2.84e-98

71.17

Show/hide

Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM
        MRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGG AESFADIGSNDPPGYDA AADAMPDTDFPP YSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRILMRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVSDHMKYPYCTLILQENQ
        AFLEV DHMKYPYC+LILQENQ
Subjt:  AFLEVSDHMKYPYCTLILQENQ

KAA0057083.1 retrotransposon protein [Cucumis melo var. makuwa]

2.45e-99

71.62

Show/hide

Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM
        MRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDA AADAMPDTDFPP YSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRILMRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVSDHMKYPYCTLILQENQ
        AFLEV DHMKYPYC+LILQENQ
Subjt:  AFLEVSDHMKYPYCTLILQENQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TXU5 Retrotransposon protein

6.9e-79

71.62

Show/hide

Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM
        MRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDA AADAMPDTDFPP YSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRILMRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVSDHMKYPYCTLILQENQ
        AFLEV DHMKYPYC+LILQENQ
Subjt:  AFLEVSDHMKYPYCTLILQENQ

A0A5A7UME4 Retrotransposon protein

1.2e-78

71.62

Show/hide

Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM
        MRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDA AADAMPDTDFPP YSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRILMRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVSDHMKYPYCTLILQENQ
        AFLEV DHMKYPYC+LILQENQ
Subjt:  AFLEVSDHMKYPYCTLILQENQ

A0A5D3CBF7 Retrotransposon protein

1.2e-78

71.62

Show/hide

Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM
        MRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDA AADAMPDTDFPP YSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRILMRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVSDHMKYPYCTLILQENQ
        AFLEV DHMKYPYC+LILQENQ
Subjt:  AFLEVSDHMKYPYCTLILQENQ

A0A5D3DPR5 Retrotransposon protein

6.9e-79

71.62

Show/hide

Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM
        MRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDA AADAMPDTDFPP YSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRILMRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVSDHMKYPYCTLILQENQ
        AFLEV DHMKYPYC+LILQENQ
Subjt:  AFLEVSDHMKYPYCTLILQENQ

E5GCB5 Retrotransposon protein

1.2e-78

71.62

Show/hide

Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM
        MRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDA AADAMPDTDFPP YSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRILMRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVSDHMKYPYCTLILQENQ
        AFLEV DHMKYPYC+LILQENQ
Subjt:  AFLEVSDHMKYPYCTLILQENQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G30140.1 unknown protein

6.3e-08

40.32

Show/hide

Query:  SGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        SGFGW+ E K   A  EV+ D++K+HP  K +  +S  H+++L  +FG   ATG  A   +D
Subjt:  SGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD

AT4G02210.1 unknown protein

5.5e-04

29.51

Show/hide

Query:  GFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        GF W+D ++ +VA+  V+D+++K HP ++    KS   Y +L  V+    +     ES ++
Subjt:  GFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD

AT4G02210.2 unknown protein

5.5e-04

29.51

Show/hide

Query:  GFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        GF W+D ++ +VA+  V+D+++K HP ++    KS   Y +L  V+    +     ES ++
Subjt:  GFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCGTGGCCCAAACTGTAGTGGTTTTGGGTGGAATGATGAAAAAAAATGCATCGTCGCTGAGAAAGAAGTCTTTGACGATTGGGTAAAGAGTCATCCGGCGGCGAAAGG
CCTCCTTAATAAGTCGTTTGTCCACTATGACGAACTGTCGTACGTGTTTGGCAAAGATCGTGCAACAGGAGGTCGGGCTGAGAGTTTTGCGGACATTGGGTCAAACGATC
CTCCTGGGTATGACGCATTTGCTGCTGATGCTATGCCAGATACGGACTTTCCGCCAACGTACAGTCCGGGTTTGAACATGTCGCCTGATGATTTGATGGAAACAAGAACC
GCTAGGGTCAGTGAACGTAGAAATGCCATCCCTGAGCTCACATTGATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGA
AGTTTCCGACCATATGAAGTACCCGTACTGCACCCTCATTCTTCAAGAAAACCAATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPTYSPGLNMSPDDLMETRT
ARVSERRNAIPELTLMDRCRLMRILMRNVDDMKAFLEVSDHMKYPYCTLILQENQ

IVF0012264 (gene) of Melon (IVF77) v1 genome