CuGenDBv2

Gene ID	IVF0012267
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposable element Tf2
Genome location	chr04:17164377..17165033
RNA-Seq Expression	IVF0012267
Synteny	IVF0012267
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0032923.1 polyprotein [Cucumis melo var. makuwa]

6.79e-120

90.43

Show/hide

Query:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA
        MHFPNWFQNW MYFGL EEIFPVE QRSYH+FQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL IKWWE  NYSHLEVNKIKDWFKA
Subjt:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA

Query:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY
        NIHLQDMTRQEDE+ L+ KNAVMSTLAGASTQ+EFN VVNNVVVNL DDNDDLPEDASP  VNDVDDLDYDPY GLDINDP LDTQPY
Subjt:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY

KAA0050443.1 polyprotein [Cucumis melo var. makuwa]

6.59e-120

90.43

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Query:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA
        MHFPNWFQNW MYFGL EEIFPVE QRSYH+FQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPS NFKALSKSLRIKWWE  NYSHLEVNKIKDWFKA
Subjt:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA

Query:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY
        NIHLQDMTRQEDE+ L+ KNAVMSTLAGASTQ+EFNYVVNNVVVN  DDNDDLPEDASP  VNDVDDLDYDPY+GLDINDP LDTQPY
Subjt:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY

KAA0054115.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

1.20e-121

89.36

Show/hide

Query:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA
        MHFPNWFQNW MYFGL EEIFPVE QRSYH+FQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWE  NYSHLEVNKI DWFKA
Subjt:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA

Query:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY
        NIHLQDMTRQEDE+ L+ KNAVMSTLAGAS Q+EFN VVNNVVVNL DDNDDL EDASP  VNDVDDLDYDPY+GLDINDP LDTQPY
Subjt:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY

KAA0068172.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

4.79e-120

89.89

Show/hide

Query:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA
        MHFPNWFQNW MYFGL EEIFPVE QRSYH+FQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWE  NYSHLEVNKIKDWFKA
Subjt:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA

Query:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY
        NIHLQDMTRQEDE+ L+ KNAVMSTLAGASTQ+EFN VVNNVVVNL DDNDDLPED SP  VN+VDDLDYDPY+GLDINDP LDTQPY
Subjt:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY

TYK28077.1 polyprotein [Cucumis melo var. makuwa]

2.38e-120

90.43

Show/hide

Query:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA
        MHFPNWFQNW MYFGL EEIFPVE QRSYH+FQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL IKWWE  NYSHLEVNKIKDWFKA
Subjt:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA

Query:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY
        NIHLQDMTRQEDE+ L+ KNAVMSTLAGASTQ+EFN VVNNVVVNL DDNDDLPEDASP  VNDVDDLDYDPY+GLDINDP LDTQPY
Subjt:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SR64 Polyprotein

1.0e-94

90.43

Show/hide

Query:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA
        MHFPNWFQNW MYFGL EEIFPVE QRSYH+FQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL IKWWE  NYSHLEVNKIKDWFKA
Subjt:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA

Query:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY
        NIHLQDMTRQEDE+ L+ KNAVMSTLAGASTQ+EFN VVNNVVVNL DDNDDLPEDASP  VNDVDDLDYDPY GLDINDP LDTQPY
Subjt:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY

A0A5A7U3G5 Polyprotein

2.7e-95

90.43

Show/hide

Query:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA
        MHFPNWFQNW MYFGL EEIFPVE QRSYH+FQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPS NFKALSKSLRIKWWE  NYSHLEVNKIKDWFKA
Subjt:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA

Query:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY
        NIHLQDMTRQEDE+ L+ KNAVMSTLAGASTQ+EFNYVVNNVVVN  DDNDDLPEDASP  VNDVDDLDYDPY+GLDINDP LDTQPY
Subjt:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY

A0A5A7UVN1 Retrotransposable element Tf2

2.3e-94

89.36

Show/hide

Query:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA
        MHFPNWFQNW MYFGL EEIFPVE QRSYH+FQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWE  NYSHLEVNKIKDWFKA
Subjt:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA

Query:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY
        NIHLQDMTRQEDE+ L+ KNAVMSTLAGASTQ+EFN VVNNVVVNL DDNDDLPED SP  VN+VDD DYDPY+GLDINDP LDTQPY
Subjt:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY

A0A5A7VIK9 Retrotransposable element Tf2

7.9e-95

89.89

Show/hide

Query:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA
        MHFPNWFQNW MYFGL EEIFPVE QRSYH+FQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWE  NYSHLEVNKIKDWFKA
Subjt:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA

Query:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY
        NIHLQDMTRQEDE+ L+ KNAVMSTLAGASTQ+EFN VVNNVVVNL DDNDDLPED SP  VN+VDDLDYDPY+GLDINDP LDTQPY
Subjt:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY

A0A5D3DW87 Polyprotein

4.6e-95

90.43

Show/hide

Query:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA
        MHFPNWFQNW MYFGL EEIFPVE QRSYH+FQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL IKWWE  NYSHLEVNKIKDWFKA
Subjt:  MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKA

Query:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY
        NIHLQDMTRQEDE+ L+ KNAVMSTLAGASTQ+EFN VVNNVVVNL DDNDDLPEDASP  VNDVDDLDYDPY+GLDINDP LDTQPY
Subjt:  NIHLQDMTRQEDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCACTTCCCAAATTGGTTTCAAAACTGGTCGATGTATTTTGGACTCTTCGAAGAAATATTTCCGGTAGAAGCTCAACGTTCATATCACATTTTTCAACAAAGTATCTA
TTCGTCACCTCTTTCAAAGACGTTTAGATTTGCTTTGTATTTCCAAATTCCCTGGATCTTTTGCTGGAATTTCCAGCTAGGACCTTCGGGAAACTTCAAAGCCCTGAGTA
AATCCCTCAGAATCAAATGGTGGGAAAATCTCAATTACTCCCATCTCGAAGTCAACAAAATCAAAGATTGGTTTAAAGCCAACATTCACCTCCAAGATATGACTAGGCAA
GAGGACGAGTCCCTTCTCGTCAGAAAAAACGCAGTCATGTCAACCCTTGCCGGAGCAAGCACTCAAGAGGAATTCAATTATGTTGTCAATAACGTCGTTGTGAACCTTTT
AGACGATAACGACGATTTACCAGAAGACGCTTCCCCAACCTTTGTTAATGATGTCGATGATCTTGACTATGACCCATACAAAGGCCTCGACATCAACGACCCACTTTTGG
ACACACAACCATATTAG

mRNA sequence

Show/hide mRNA sequence

CGTGACTATACAGAAGCATGGTATATTGTATTTTGACTCTAACCATACAACCATTCTTGGTTTGTGACATTTTGCAAACAAGCTTACAAAATGCACTTCCCAAATTGGTT
TCAAAACTGGTCGATGTATTTTGGACTCTTCGAAGAAATATTTCCGGTAGAAGCTCAACGTTCATATCACATTTTTCAACAAAGTATCTATTCGTCACCTCTTTCAAAGA
CGTTTAGATTTGCTTTGTATTTCCAAATTCCCTGGATCTTTTGCTGGAATTTCCAGCTAGGACCTTCGGGAAACTTCAAAGCCCTGAGTAAATCCCTCAGAATCAAATGG
TGGGAAAATCTCAATTACTCCCATCTCGAAGTCAACAAAATCAAAGATTGGTTTAAAGCCAACATTCACCTCCAAGATATGACTAGGCAAGAGGACGAGTCCCTTCTCGT
CAGAAAAAACGCAGTCATGTCAACCCTTGCCGGAGCAAGCACTCAAGAGGAATTCAATTATGTTGTCAATAACGTCGTTGTGAACCTTTTAGACGATAACGACGATTTAC
CAGAAGACGCTTCCCCAACCTTTGTTAATGATGTCGATGATCTTGACTATGACCCATACAAAGGCCTCGACATCAACGACCCACTTTTGGACACACAACCATATTAG

Protein sequence

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MHFPNWFQNWSMYFGLFEEIFPVEAQRSYHIFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWENLNYSHLEVNKIKDWFKANIHLQDMTRQ
EDESLLVRKNAVMSTLAGASTQEEFNYVVNNVVVNLLDDNDDLPEDASPTFVNDVDDLDYDPYKGLDINDPLLDTQPY

IVF0012267 (gene) of Melon (IVF77) v1 genome