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IVF0012271 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012271
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReplication protein A 32 kDa subunit B
Genome locationchr02:19159954..19160529
RNA-Seq ExpressionIVF0012271
SyntenyIVF0012271
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058272.1 hypothetical protein E6C27_scaffold274G005980 [Cucumis melo var. makuwa]5.94e-12899.48Show/hide
Query:  MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKI
        MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKI
Subjt:  MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKI

Query:  WFWNKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF
        WFWNKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSND SPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF
Subjt:  WFWNKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF

KAG6589705.1 Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]7.59e-6068.65Show/hide
Query:  DHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPV-KIWFW
        +H LH LSE PFSLLQAN+ FVHKILSRNSS GRSARLPAC LPGQIPF WE QPGLPK++PSE     + PP  +S  G SKTPH VP+Q    KIWFW
Subjt:  DHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPV-KIWFW

Query:  NKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIR
         K R+K R  VKKNGA GSSSS RRHV++ESEF R KSND   SSSSLSCIS+SLSS   S+SSS+ Y  RRRSKL SLAK F+R
Subjt:  NKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIR

KGN65459.1 hypothetical protein Csa_020126 [Cucumis sativus]2.21e-11691.62Show/hide
Query:  MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKI
        MAAKDHTLHRLSEKPFSLLQANQ FVHKILSRNSSFGRSARLPACGLPGQ+PFNWE QPGLPKNQPS+ PPP +LPPPSSSA GLSKTPHVVPKQAPVKI
Subjt:  MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKI

Query:  WFWNKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF
        WFWNKQRRKSRRAVKK+GALGSSS PRRHVDR+SEFCR+KSND S SSSSLSCISYS+SSNSSSASSSDRYNNRRR KLGSLAKEFIRWAF
Subjt:  WFWNKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF

TYK11824.1 hypothetical protein E5676_scaffold152G00370 [Cucumis melo var. makuwa]3.58e-129100Show/hide
Query:  MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKI
        MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKI
Subjt:  MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKI

Query:  WFWNKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF
        WFWNKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF
Subjt:  WFWNKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF

XP_022987494.1 uncharacterized protein LOC111485037 [Cucurbita maxima]4.57e-6668.59Show/hide
Query:  DHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPV-KIWFW
        DH LH  SE PFSLLQAN+ FVHKILSRNSS GRSARLPAC LPGQIPF WE QPGLPK++PSE       PPP +   G SKTPH VPKQ    KIW W
Subjt:  DHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPV-KIWFW

Query:  NKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSS---SSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF
         K R+K R  VKKNGA GSSSS R HV++ESEFCR KSND S SS   SSLSCIS+SLSS   S+SSS+ Y  RRRSKL SLAK F+RWAF
Subjt:  NKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSS---SSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF

TrEMBL top hitse value%identityAlignment
A0A0A0LWV3 Uncharacterized protein1.3e-8991.62Show/hide
Query:  MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKI
        MAAKDHTLHRLSEKPFSLLQANQ FVHKILSRNSSFGRSARLPACGLPGQ+PFNWE QPGLPKNQPS+ PPP +LPPPSSSA GLSKTPHVVPKQAPVKI
Subjt:  MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKI

Query:  WFWNKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF
        WFWNKQRRKSRRAVKK+GALG SSSPRRHVDR+SEFCR+KSND S SSSSLSCISYS+SSNSSSASSSDRYNNRRR KLGSLAKEFIRWAF
Subjt:  WFWNKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF

A0A314YA94 Uncharacterized protein8.5e-1233.98Show/hide
Query:  KPFSLLQANQFFVHKILSRNSSFG-RSARLPACG-LPGQIPFNWETQPGLPKNQP-------------SETPPPAELPPPSSSAFGLSKTPHVVPKQAPV
        K  ++  AN+FF +KILSRNSS G  S+R    G + G +PF WE +PG PK +              ++ PP    PPP++ +  ++  P+     +  
Subjt:  KPFSLLQANQFFVHKILSRNSSFG-RSARLPACG-LPGQIPFNWETQPGLPKNQP-------------SETPPPAELPPPSSSAFGLSKTPHVVPKQAPV

Query:  KIWFW------NKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKS---NDGSPSSSSLSCISYSLSS----NSSSASSSDRYNNRRRSKLGSLAKE
        ++W W      +K +RK ++  K NG     ++    +  +++ C+        GS  SSS SC S SLSS    + SS+SSS    N R SK+  LA+ 
Subjt:  KIWFW------NKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKS---NDGSPSSSSLSCISYSLSS----NSSSASSSDRYNNRRRSKLGSLAKE

Query:  FIRWAF
        FIRWAF
Subjt:  FIRWAF

A0A5A7UQX0 Uncharacterized protein2.0e-9899.48Show/hide
Query:  MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKI
        MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKI
Subjt:  MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKI

Query:  WFWNKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF
        WFWNKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSND SPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF
Subjt:  WFWNKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF

A0A5D3CKX4 Uncharacterized protein2.4e-99100Show/hide
Query:  MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKI
        MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKI
Subjt:  MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKI

Query:  WFWNKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF
        WFWNKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF
Subjt:  WFWNKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF

A0A6J1JJ17 uncharacterized protein LOC1114850379.2e-5168.06Show/hide
Query:  DHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPK-QAPVKIWFW
        DH LH  SE PFSLLQAN+ FVHKILSRNSS GRSARLPAC LPGQIPF WE QPGLPK++PSE   P   PPP +   G SKTPH VPK Q   KIW W
Subjt:  DHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPK-QAPVKIWFW

Query:  NKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSS---SSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF
         K R+K R  VKKNGA GSSSS R HV++ESEFC RKSND S SS   SSLSCIS+SLSS+SSS++       RRRSKL SLAK F+RWAF
Subjt:  NKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSS---SSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCAAAAGATCACACCCTTCATCGTCTCTCTGAAAAACCCTTTTCATTACTTCAAGCAAATCAATTTTTTGTCCACAAAATCCTTTCTAGAAACTCCTCATTTGG
CCGCTCTGCCCGTCTCCCTGCCTGTGGCCTCCCCGGTCAAATCCCTTTCAATTGGGAAACCCAACCCGGCCTCCCCAAAAACCAACCTTCCGAAACCCCCCCGCCAGCCG
AACTCCCGCCGCCGTCATCCTCTGCCTTCGGCCTCTCCAAAACTCCTCACGTAGTCCCTAAGCAAGCGCCGGTTAAGATTTGGTTTTGGAATAAACAGAGGAGAAAATCG
AGGCGTGCGGTTAAGAAAAACGGTGCGCTTGGATCGTCCTCCTCACCCAGACGACATGTCGATCGTGAGAGTGAGTTTTGTAGAAGAAAATCAAACGACGGGTCGCCGTC
GTCGTCGTCTTTGTCGTGTATTTCTTATTCGTTGTCTTCGAATTCTTCTTCGGCTTCGTCGTCAGATCGTTACAACAACCGACGGCGCTCTAAACTCGGTAGCCTTGCTA
AAGAGTTCATACGGTGGGCCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCAAAAGATCACACCCTTCATCGTCTCTCTGAAAAACCCTTTTCATTACTTCAAGCAAATCAATTTTTTGTCCACAAAATCCTTTCTAGAAACTCCTCATTTGG
CCGCTCTGCCCGTCTCCCTGCCTGTGGCCTCCCCGGTCAAATCCCTTTCAATTGGGAAACCCAACCCGGCCTCCCCAAAAACCAACCTTCCGAAACCCCCCCGCCAGCCG
AACTCCCGCCGCCGTCATCCTCTGCCTTCGGCCTCTCCAAAACTCCTCACGTAGTCCCTAAGCAAGCGCCGGTTAAGATTTGGTTTTGGAATAAACAGAGGAGAAAATCG
AGGCGTGCGGTTAAGAAAAACGGTGCGCTTGGATCGTCCTCCTCACCCAGACGACATGTCGATCGTGAGAGTGAGTTTTGTAGAAGAAAATCAAACGACGGGTCGCCGTC
GTCGTCGTCTTTGTCGTGTATTTCTTATTCGTTGTCTTCGAATTCTTCTTCGGCTTCGTCGTCAGATCGTTACAACAACCGACGGCGCTCTAAACTCGGTAGCCTTGCTA
AAGAGTTCATACGGTGGGCCTTTTAA
Protein sequenceShow/hide protein sequence
MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKS
RRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF