CuGenDBv2

Gene ID	IVF0012316
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr02:8560414..8561058
RNA-Seq Expression	IVF0012316
Synteny	IVF0012316
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0042393 - histone binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0060177.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.54e-139

97.66

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Query:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL
        MASTRFEVSKFN NDDFALWRK IRVILVQHKV KILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL
Subjt:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL

Query:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE
        YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISE+MSDENQVVILLNSLPETYREVKATIKYG+DSLTMSIVLDALKTRNLEIKKERKDGELLMAREE
Subjt:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE

Query:  VTKRAGKAKRRVSG
        VTKRAGKAKRRVSG
Subjt:  VTKRAGKAKRRVSG

KAA0066028.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

7.62e-114

85.17

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Query:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL
        MASTRFEVSKFNGN DFA+WRK IR ILVQHKVAKILDE RLPENIT SEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGEL KKLE+LYLTKSLPNK+
Subjt:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL

Query:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE
        Y+KEKFFGYKM QSK LEENLD+FQKI+VDLNNI E+MS+ENQ VILLN LPE YREVKA IKYG DSLTMSIVLDALKTRNLEIKKE KDGELLMAR  
Subjt:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE

Query:  VTKRAGKAK
          K++ K K
Subjt:  VTKRAGKAK

TYK04234.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.67e-143

100

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Query:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL
        MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL
Subjt:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL

Query:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE
        YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE
Subjt:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE

Query:  VTKRAGKAKRRVSG
        VTKRAGKAKRRVSG
Subjt:  VTKRAGKAKRRVSG

TYK05711.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.56e-117

85.45

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Query:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL
        MASTRFEVSKFN N DFALWRK IRVILVQHKV KI DEE LPENIT SEKRDMDEMAYSTILLYLSDEVLRLVDEATT GELWKKLE+LYLTK LPNKL
Subjt:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL

Query:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE
        YLK+KFFGYKM++SKGLEENLD+FQKIIV LNNI E+MSDENQVVILLNSLPETYREVKA IKYGQDSLTM+IVLDALKTRNLEIKKE KDGELLMAR  
Subjt:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE

Query:  VTKRAGKAKRRVS
          K   K K + S
Subjt:  VTKRAGKAKRRVS

TYK10340.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.44e-115

84.04

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Query:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL
        MASTR EVSKFNGN DFALWRK IR IL+QHKVAKILDEERLPENIT SEKRDMDEM YSTILLYLSDEVLRLVDEATT GELWKKLE+LYL KSL NK+
Subjt:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL

Query:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE
        Y+KEKFFGYKMDQSK LEENLD+FQKIIVDLNNI E+MSDENQ VILLNSLPE YREVKA IKYG+DSL MSI+LDALKTRNLEIKKE KDGELLMAR  
Subjt:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE

Query:  VTKRAGKAKRRVS
          K++ K K R S
Subjt:  VTKRAGKAKRRVS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

8.4e-93

87.2

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Query:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL
        MASTRFEVSKFNG+ DFALWRK IR ILVQHKVAKILDEERLP+NIT SEKRDMDEMAY TILLYLSDEVLRLVDEATTTGELWKKLE+LYLTKSLPNK+
Subjt:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL

Query:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE
        Y+KEKFFGYKMDQSK LEENLD+FQKI+VDLNNI E+MSDENQ VILLNSLPETYREVKA IKYG DSLTMSIVLDALKTRNLEIKKERKDGELLMAR  
Subjt:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE

Query:  VTKRAGKAKRR
          K++ K K R
Subjt:  VTKRAGKAKRR

A0A5A7UB25 Putative gag-pol polyprotein

6.4e-93

86.73

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Query:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL
        MASTRFEVSKFNG+ DF+LWRK IR ILVQHKVAKILDEERLP+NIT SEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLE+LYLTKSL NK+
Subjt:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL

Query:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE
        Y+KEKFFGYKMDQSK LEENLD+FQKI+VDLNNI E+MSDENQ VILLNSLPETYREVKA IKYG+DSLTMSIVLDALKTRNLEIKKERKDGELLMAR  
Subjt:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE

Query:  VTKRAGKAKRR
          K++ K K R
Subjt:  VTKRAGKAKRR

A0A5A7V025 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.8e-107

97.66

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Query:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL
        MASTRFEVSKFN NDDFALWRK IRVILVQHKV KILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL
Subjt:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL

Query:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE
        YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISE+MSDENQVVILLNSLPETYREVKATIKYG+DSLTMSIVLDALKTRNLEIKKERKDGELLMAREE
Subjt:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE

Query:  VTKRAGKAKRRVSG
        VTKRAGKAKRRVSG
Subjt:  VTKRAGKAKRRVSG

A0A5D3BZ25 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.5e-110

100

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Query:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL
        MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL
Subjt:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL

Query:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE
        YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE
Subjt:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE

Query:  VTKRAGKAKRRVSG
        VTKRAGKAKRRVSG
Subjt:  VTKRAGKAKRRVSG

A0A5D3DNU1 Putative gag-pol polyprotein

2.0e-94

87.68

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Query:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL
        MASTRFEVSKFNG+ DFALWRK IR ILVQHKVAKILDEERLP+NIT SEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLE+LYLTKSLPNK+
Subjt:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL

Query:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE
        Y+KEKFFGYKMDQSK LEENLD+FQKI+VDLNNI E+MSDENQ VILLNSLPETYREVKA IKYG+DSLTMSIVLDALKTRNLEIKKERKDGELLMAR  
Subjt:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREE

Query:  VTKRAGKAKRR
          K++ K K R
Subjt:  VTKRAGKAKRR

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

3.5e-11

25.52

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Query:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL
        M   +  +  F+G + +A+W+  IR +L +  V K++D   +P  +  S K+  +  A STI+ YLSD  L       T  ++ + L+ +Y  KSL ++L
Subjt:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKL

Query:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIK-YGQDSLTMSIVLDALKTRNLEIKKERKD
         L+++    K+     L  +   F ++I +L     ++ + +++  LL +LP  Y  +   I+   +++LT++ V + L  + ++IK +  D
Subjt:  YLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIK-YGQDSLTMSIVLDALKTRNLEIKKERKD

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.3e-29

33.49

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Query:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILD-EERLPENITVSEKRDMDEMAYSTILLYLSDEVL-RLVDEATTTGELWKKLENLYLTKSLPN
        M+  ++EV+KFNG++ F+ W++ +R +L+Q  + K+LD + + P+ +   +  D+DE A S I L+LSD+V+  ++DE T  G +W +LE+LY++K+L N
Subjt:  MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILD-EERLPENITVSEKRDMDEMAYSTILLYLSDEVL-RLVDEATTTGELWKKLENLYLTKSLPN

Query:  KLYLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAR
        KLYLK++ +   M +      +L+ F  +I  L N+  ++ +E++ ++LLNSLP +Y  +  TI +G+ ++ +  V  AL       KK    G+ L   
Subjt:  KLYLKEKFFGYKMDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAR

Query:  EEVTKRAGKAKRRVS
          +T+  G++ +R S
Subjt:  EEVTKRAGKAKRRVS

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTTCGACGCGGTTTGAGGTGTCTAAGTTTAATGGGAACGATGACTTTGCTCTTTGGAGGAAAAATATTAGAGTTATTTTGGTTCAACATAAAGTAGCTAAAATCTT
AGATGAAGAGAGACTTCCAGAAAATATTACAGTAAGTGAAAAGAGGGATATGGACGAAATGGCCTATTCAACGATCCTTCTGTATTTATCAGATGAAGTGCTTAGGCTAG
TGGATGAGGCTACTACTACAGGGGAGTTGTGGAAGAAGCTAGAAAATCTTTACTTGACAAAGTCCTTGCCAAATAAATTATATCTAAAGGAGAAATTCTTTGGATATAAG
ATGGATCAAAGTAAAGGCTTAGAAGAGAACTTGGATAAATTTCAGAAGATTATAGTTGATCTCAATAACATCAGTGAGGAGATGTCGGATGAGAATCAAGTAGTGATTCT
TTTAAATTCATTACCAGAAACATATCGAGAGGTTAAGGCAACTATTAAATATGGTCAGGATTCATTGACCATGAGTATAGTGTTGGATGCCTTGAAGACTAGAAATCTCG
AAATTAAGAAAGAACGCAAGGATGGAGAGTTACTCATGGCCAGAGAAGAAGTGACAAAAAGAGCTGGAAAGGCAAAGAGAAGAGTTTCAGGATGA

mRNA sequence

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Protein sequence

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MASTRFEVSKFNGNDDFALWRKNIRVILVQHKVAKILDEERLPENITVSEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKLYLKEKFFGYK
MDQSKGLEENLDKFQKIIVDLNNISEEMSDENQVVILLNSLPETYREVKATIKYGQDSLTMSIVLDALKTRNLEIKKERKDGELLMAREEVTKRAGKAKRRVSG

IVF0012316 (gene) of Melon (IVF77) v1 genome