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IVF0012365 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012365
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr12:7108725..7109176
RNA-Seq ExpressionIVF0012365
SyntenyIVF0012365
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037114.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.76e-6777.85Show/hide
Query:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW
        M FGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYS SKEKHVEHLRIV              KC+FWLDRVV LGH+VS+EGICVDP+K E  DK 
Subjt:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW

Query:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELTDAC
        ERPTS+TEI+SFLGL+ YYR+ VEGFSKLALPLT LTRKNVKFE TDAC
Subjt:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELTDAC

KAA0047618.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.30e-7177.33Show/hide
Query:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW
        MLFGLTNAP AFMDLMN VFH YLDQFVI+FIDDILVYS SKEKH EHLRIV              KC+FWLDRV++LGHVVSVEGICVDPQK E V+KW
Subjt:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW

Query:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELTDACE
        ERPTS+ EIRSFL LA YYRRFVEGFSKLAL LT LT+KNVKFE TDACE
Subjt:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELTDACE

TYK13961.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.82e-6777.85Show/hide
Query:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW
        M FGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYS SKEKHVEHLRIV              KC+FWLDRVV LGH+VS+EGICVDP+K E  DK 
Subjt:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW

Query:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELTDAC
        ERPTS+TEI+SFLGL+ YYR+ VEGFSKLALPLT LTRKNVKFE TDAC
Subjt:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELTDAC

TYK25908.1 Retrotransposon protein [Cucumis melo var. makuwa]5.37e-6670.67Show/hide
Query:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW
        M FGLTNAPA FMDLMNR+FH YLDQFVIVFIDDILVYS  +E H EHLRIV              KC+FWL++VVFLGHVVS +G+ VDPQK E V  W
Subjt:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW

Query:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELTDACE
        ERP S TE+RSFLGLAGYYRRF+E FS+LALPLT LTRKNVKFE +D CE
Subjt:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELTDACE

XP_016900832.1 PREDICTED: RNA-directed DNA polymerase homolog [Cucumis melo]2.13e-6875Show/hide
Query:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW
        M FGLTNAP AFM+LMN +FH YLDQFVIVFIDDILVYSGSKEKHVEHL IV              KC FWLD ++FLGH+VS EGICVDP KTE VDKW
Subjt:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW

Query:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFE
        ER TSVTE+RSFLGL GYYRRFVEGFSKL LPLT LT+KN+KFE
Subjt:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFE

TrEMBL top hitse value%identityAlignment
A0A1S4DXX5 RNA-directed DNA polymerase homolog3.2e-5375Show/hide
Query:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW
        M FGLTNAP AFM+LMN +FH YLDQFVIVFIDDILVYSGSKEKHVEHL IV              KC FWLD ++FLGH+VS EGICVDP KTE VDKW
Subjt:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW

Query:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFE
        ER TSVTE+RSFLGL GYYRRFVEGFSKL LPLT LT+KN+KFE
Subjt:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFE

A0A5A7T0V4 Putative DNA/RNA polymerases superfamily protein8.0e-5777.85Show/hide
Query:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW
        M FGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYS SKEKHVEHLRIV              KC+FWLDRVV LGH+VS+EGICVDP+K E  DK 
Subjt:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW

Query:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELTDAC
        ERPTS+TEI+SFLGL+ YYR+ VEGFSKLALPLT LTRKNVKFE TDAC
Subjt:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELTDAC

A0A5A7TXH8 DNA/RNA polymerases superfamily protein5.6e-5877.33Show/hide
Query:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW
        MLFGLTNAP AFMDLMN VFH YLDQFVI+FIDDILVYS SKEKH EHLRIV              KC+FWLDRV++LGHVVSVEGICVDPQK E V+KW
Subjt:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW

Query:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELTDACE
        ERPTS+ EIRSFL LA YYRRFVEGFSKLAL LT LT+KNVKFE TDACE
Subjt:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELTDACE

A0A5A7UBV9 Uncharacterized protein2.4e-5370.67Show/hide
Query:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW
        M FGLTNAPA FMDLMNR+FH YLDQFVIVFIDDILVYS  +E H EHLRIV              KC+FWL++VVFLGHVVS +G+ VDPQK E V  W
Subjt:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW

Query:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELTDACE
        ERPTS TE+RSFLGLAGYYRRF+E FS+LALPLT LTRKN KFE +D CE
Subjt:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELTDACE

A0A5D3CQ91 Putative DNA/RNA polymerases superfamily protein8.0e-5777.85Show/hide
Query:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW
        M FGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYS SKEKHVEHLRIV              KC+FWLDRVV LGH+VS+EGICVDP+K E  DK 
Subjt:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW

Query:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELTDAC
        ERPTS+TEI+SFLGL+ YYR+ VEGFSKLALPLT LTRKNVKFE TDAC
Subjt:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELTDAC

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.1e-2639.46Show/hide
Query:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW
        M FGL NAPA F   MN +    L++  +V++DDI+V+S S ++H++ L +V              KC+F      FLGHV++ +GI  +P+K E + K+
Subjt:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW

Query:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELTD
          PT   EI++FLGL GYYR+F+  F+ +A P+TK  +KN+K + T+
Subjt:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELTD

P0CT41 Transposon Tf2-12 polyprotein3.5e-1730.82Show/hide
Query:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW
        M +G++ APA F   +N +     +  V+ ++DDIL++S S+ +HV+H++ V              KC+F   +V F+G+ +S +G     +  + V +W
Subjt:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW

Query:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELT
        ++P +  E+R FLG   Y R+F+   S+L  PL  L +K+V+++ T
Subjt:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFELT

P10401 Retrovirus-related Pol polyprotein from transposon gypsy9.2e-1831.62Show/hide
Query:  FGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHL-RIVKC-------------DFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWER
        FGL NA + F   ++ V    + +   V++DD++++S ++  HV H+  ++KC              F+ + V +LG +VS +G   DP+K + + ++  
Subjt:  FGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHL-RIVKC-------------DFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWER

Query:  PTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTR
        P  V ++RSFLGLA YYR F++ F+ +A P+T + +
Subjt:  PTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTR

P20825 Retrovirus-related Pol polyprotein from transposon 2973.6e-2235.42Show/hide
Query:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW
        M FGL NAPA F   MN +    L++  +V++DDI+++S S  +H+  +++V              KC+F      FLGH+V+ +GI  +P K + +  +
Subjt:  MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKW

Query:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFE
          PT   EIR+FLGL GYYR+F+  ++ +A P+T   +K  K +
Subjt:  ERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKNVKFE

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus6.2e-2237.5Show/hide
Query:  FGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWER
        FGL NAPA F  +++ +   ++ +   V+IDDI+V+S   + H ++LR+V              K  F   +V FLG++V+ +GI  DP+K   + +   
Subjt:  FGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIV--------------KCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWER

Query:  PTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTR
        PTSV E++ FLG+  YYR+F++ ++K+A PLT LTR
Subjt:  PTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTR

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein4.7e-1744.19Show/hide
Query:  EKHVEHLRIVKCDFWLDRVVFLG--HVVSVEGICVDPQKTEVVDKWERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKN
        E+H  +    KC F   ++ +LG  H++S EG+  DP K E +  W  P + TE+R FLGL GYYRRFV+ + K+  PLT+L +KN
Subjt:  EKHVEHLRIVKCDFWLDRVVFLG--HVVSVEGICVDPQKTEVVDKWERPTSVTEIRSFLGLAGYYRRFVEGFSKLALPLTKLTRKN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTTTGGGTTAACTAATGCCCCTGCAGCCTTCATGGACCTGATGAATCGAGTGTTTCATTCATACCTGGATCAGTTTGTTATTGTGTTCATAGACGATATATTGGT
TTATTCAGGGAGTAAAGAAAAGCACGTTGAACACCTCAGAATAGTTAAGTGCGATTTCTGGCTGGATCGGGTAGTATTCTTGGGTCATGTGGTTTCGGTGGAAGGAATTT
GTGTTGATCCTCAGAAAACTGAAGTAGTAGACAAGTGGGAAAGACCCACCTCCGTCACTGAGATCCGAAGTTTTCTTGGTTTAGCGGGATATTATCGTCGATTTGTGGAA
GGTTTTTCTAAATTGGCACTTCCATTAACCAAATTAACCAGGAAAAATGTAAAGTTTGAATTAACAGATGCTTGTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTTTGGGTTAACTAATGCCCCTGCAGCCTTCATGGACCTGATGAATCGAGTGTTTCATTCATACCTGGATCAGTTTGTTATTGTGTTCATAGACGATATATTGGT
TTATTCAGGGAGTAAAGAAAAGCACGTTGAACACCTCAGAATAGTTAAGTGCGATTTCTGGCTGGATCGGGTAGTATTCTTGGGTCATGTGGTTTCGGTGGAAGGAATTT
GTGTTGATCCTCAGAAAACTGAAGTAGTAGACAAGTGGGAAAGACCCACCTCCGTCACTGAGATCCGAAGTTTTCTTGGTTTAGCGGGATATTATCGTCGATTTGTGGAA
GGTTTTTCTAAATTGGCACTTCCATTAACCAAATTAACCAGGAAAAATGTAAAGTTTGAATTAACAGATGCTTGTGAATGA
Protein sequenceShow/hide protein sequence
MLFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSGSKEKHVEHLRIVKCDFWLDRVVFLGHVVSVEGICVDPQKTEVVDKWERPTSVTEIRSFLGLAGYYRRFVE
GFSKLALPLTKLTRKNVKFELTDACE