CuGenDBv2

Gene ID	IVF0012382
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein LTV1-like protein
Genome location	chr06:15603393..15604089
RNA-Seq Expression	IVF0012382
Synteny	IVF0012382
Gene Ontology terms	GO:0000056 - ribosomal small subunit export from nucleus (biological process) GO:0042274 - ribosomal small subunit biogenesis (biological process) GO:0005634 - nucleus (cellular component) GO:0005829 - cytosol (cellular component) GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032612.1 protein LTV1-like protein [Cucumis melo var. makuwa]

1.44e-32

69.31

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Query:  MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVV
        MQSRGEVGGTSS +NVRREILELEFPDDGYNYLLYLR                           AYDASRMIVSKVNFDAN NVYEA SKIVGVRVQNVV
Subjt:  MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVV

Query:  D
        D
Subjt:  D

KAA0060375.1 protein LTV1-like protein [Cucumis melo var. makuwa]

6.95e-57

78.46

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Query:  MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVV
        MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLR                           AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVV
Subjt:  MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVV

Query:  DLEIAALLNDDDLLRFGSDVTMIYCDLVMM
        DLEIAALLNDDDLLRFGSDVTMIYCDLV+M
Subjt:  DLEIAALLNDDDLLRFGSDVTMIYCDLVMM

XP_008448616.1 PREDICTED: protein LTV1 homolog [Cucumis melo]

2.72e-37

66.4

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Query:  FGSFMQSRGEVGGTSS-PENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVR
        FGS MQSRGEVGGTSS PENVRREILEL FPDDGYNYLL+LR                           AYDASRM+VSK+N DA+ENVY+  SKIVG+R
Subjt:  FGSFMQSRGEVGGTSS-PENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVR

Query:  VQNVVDLEIAALLNDDDLLRFGSDV
        VQNVVD EIAALL+DDDL RFGSDV
Subjt:  VQNVVDLEIAALLNDDDLLRFGSDV

XP_011650323.1 protein LTV1 homolog [Cucumis sativus]

5.15e-34

63.2

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Query:  FGSFMQSRGEVGGTSS-PENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVR
        FGS MQ  G+VGGTSS PENVR++ILEL FPDDGYNYLL+LR                           AYDASRMIVSK+N DA+EN Y+  SKIVGVR
Subjt:  FGSFMQSRGEVGGTSS-PENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVR

Query:  VQNVVDLEIAALLNDDDLLRFGSDV
        VQNVVD EIAALL+DDDL RFGSDV
Subjt:  VQNVVDLEIAALLNDDDLLRFGSDV

XP_038898842.1 protein LTV1 homolog [Benincasa hispida]

6.39e-30

59.2

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Query:  FGSFMQSRGEVGGTSS-PENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVR
        FG  ++ R EVGGT+  PENVRREILEL FPDDGYNYLL+LR                           AYDASR+IVSK N DA+ N+Y+  SK VGVR
Subjt:  FGSFMQSRGEVGGTSS-PENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVR

Query:  VQNVVDLEIAALLNDDDLLRFGSDV
        VQNVVD EIAALL+DDDL RFGSDV
Subjt:  VQNVVDLEIAALLNDDDLLRFGSDV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L517 Uncharacterized protein

1.1e-29

60.45

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Query:  FGSFMQSRGEVGGTSS-PENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVR
        FGS MQ  G+VGGTSS PENVR++ILEL FPDDGYNYLL+LR                           AYDASRMIVSK+N DA+EN Y+  SKIVGVR
Subjt:  FGSFMQSRGEVGGTSS-PENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVR

Query:  VQNVVDLEIAALLNDDDLLRFGSDVTMIYCDLVM
        VQNVVD EIAALL+DDDL RFGSDV  +  D V+
Subjt:  VQNVVDLEIAALLNDDDLLRFGSDVTMIYCDLVM

A0A1S3BKZ8 protein LTV1 homolog

2.3e-32

63.43

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Query:  FGSFMQSRGEVGGTSS-PENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVR
        FGS MQSRGEVGGTSS PENVRREILEL FPDDGYNYLL+LR                           AYDASRM+VSK+N DA+ENVY+  SKIVG+R
Subjt:  FGSFMQSRGEVGGTSS-PENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVR

Query:  VQNVVDLEIAALLNDDDLLRFGSDVTMIYCDLVM
        VQNVVD EIAALL+DDDL RFGSDV  +  D V+
Subjt:  VQNVVDLEIAALLNDDDLLRFGSDVTMIYCDLVM

A0A5A7SNI8 Protein LTV1-like protein

2.7e-25

69.31

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Query:  MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVV
        MQSRGEVGGTSS +NVRREILELEFPDDGYNYLLYLR                           AYDASRMIVSKVNFDAN NVYEA SKIVGVRVQNVV
Subjt:  MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVV

Query:  D
        D
Subjt:  D

A0A5A7V3C9 Protein LTV1-like protein

2.0e-44

78.46

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Query:  MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVV
        MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLR                           AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVV
Subjt:  MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVV

Query:  DLEIAALLNDDDLLRFGSDVTMIYCDLVMM
        DLEIAALLNDDDLLRFGSDVTMIYCDLV+M
Subjt:  DLEIAALLNDDDLLRFGSDVTMIYCDLVMM

A0A5D3CI19 Protein LTV1-like protein

2.3e-32

63.43

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Query:  FGSFMQSRGEVGGTSS-PENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVR
        FGS MQSRGEVGGTSS PENVRREILEL FPDDGYNYLL+LR                           AYDASRM+VSK+N DA+ENVY+  SKIVG+R
Subjt:  FGSFMQSRGEVGGTSS-PENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVSKVNFDANENVYEAVSKIVGVR

Query:  VQNVVDLEIAALLNDDDLLRFGSDVTMIYCDLVM
        VQNVVD EIAALL+DDDL RFGSDV  +  D V+
Subjt:  VQNVVDLEIAALLNDDDLLRFGSDVTMIYCDLVM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G49990.1 unknown protein

1.3e-14

41.46

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Query:  TSSPENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVS-KVNFDANEN--VYEAVSKIVGVRVQNVVDLEIAA
        +S P +VR+EILEL +PDDGYNYL +LR                           AYDASR+ +S  VN + N+N  +Y   SK V V+VQ  +D E+AA
Subjt:  TSSPENVRREILELEFPDDGYNYLLYLR---------------------------AYDASRMIVS-KVNFDANEN--VYEAVSKIVGVRVQNVVDLEIAA

Query:  LLNDDDLLRFGSDVTMIYCDLVM
        LL + D   FGSDV  +  D V+
Subjt:  LLNDDDLLRFGSDVTMIYCDLVM

Sequences

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CDS sequence

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ATGGAACACACACATATGTATATGCTTATTTATTCGTTACTTCATATTGTGATGGAACTGCTGCCACCGATCGTGTTTTTGTTTGGGTCATTTATGCAGTCTCGTGGGGA
AGTTGGTGGAACGTCGTCACCAGAAAATGTCAGAAGAGAGATTTTGGAGCTTGAGTTCCCTGATGATGGTTACAATTATTTGCTGTATCTTCGGGCTTATGACGCCTCCA
GAATGATTGTTTCTAAAGTGAACTTTGATGCCAATGAGAACGTATACGAAGCTGTATCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGTTGACCTTGAAATAGCTGCC
CTTCTTAATGACGATGATTTATTGCGGTTTGGTTCTGATGTGACGATGATTTATTGCGATTTGGTTATGATGTGA

mRNA sequence

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Protein sequence

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MEHTHMYMLIYSLLHIVMELLPPIVFLFGSFMQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLRAYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVDLEIAA
LLNDDDLLRFGSDVTMIYCDLVMM

IVF0012382 (gene) of Melon (IVF77) v1 genome