CuGenDBv2

Gene ID	IVF0012399
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Mediator of RNA polymerase II transcription subunit 9
Genome location	chr04:16229746..16231253
RNA-Seq Expression	IVF0012399
Synteny	IVF0012399
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR011425 - Mediator of RNA polymerase II transcription subunit 9 IPR038790 - Mediator of RNA polymerase II transcription subunit 9, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6574160.1 Mediator of RNA polymerase II transcription subunit 9, partial [Cucurbita argyrosperma subsp. sororia]

1.99e-41

96.2

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Query:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE
        D IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+HRRELIGKYKNSVEELVKGE
Subjt:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE

XP_011652352.2 mediator of RNA polymerase II transcription subunit 9 [Cucumis sativus]

2.01e-43

98.75

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Query:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP
        DAIENGTRDQQSDALVNDLNNHFEKC+QLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP
Subjt:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP

XP_016900408.1 PREDICTED: mediator of RNA polymerase II transcription subunit 9, partial [Cucumis melo]

4.27e-44

100

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Query:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP
        DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP
Subjt:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP

XP_022968420.1 mediator of RNA polymerase II transcription subunit 9-like [Cucurbita maxima]

1.28e-41

96.2

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Query:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE
        D IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+HRRELIGKYKNSVEELVKGE
Subjt:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE

XP_038903145.1 mediator of RNA polymerase II transcription subunit 9 [Benincasa hispida]

4.37e-43

97.5

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Query:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP
        DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+HRRELIGKYKNSVEELVKG+P
Subjt:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LDE7 Mediator of RNA polymerase II transcription subunit 9

8.2e-42

98.89

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Query:  MDFPGGGNWTDAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP
        MDFPGGGNWTDAIENGTRDQQSDALVNDLNNHFEKC+QLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP
Subjt:  MDFPGGGNWTDAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP

A0A1S4DWQ6 Mediator of RNA polymerase II transcription subunit 9

5.7e-35

100

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Query:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP
        DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP
Subjt:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP

A0A6J1FZC2 mediator of RNA polymerase II transcription subunit 9-like

1.2e-32

96.2

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Query:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE
        D IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+HRRELIGKYKNSVEELVKGE
Subjt:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE

A0A6J1HX54 Mediator of RNA polymerase II transcription subunit 9

1.2e-32

96.2

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Query:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE
        D IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+HRRELIGKYKNSVEELVKGE
Subjt:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE

A0A6J1K651 mediator of RNA polymerase II transcription subunit 9-like

2.0e-32

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Query:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP
        DAIE G RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLS+RRELIGKYK+SVEELVKGEP
Subjt:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP

SwissProt top hits

e value

%identity

Alignment

Q8RWA2 Mediator of RNA polymerase II transcription subunit 9

3.3e-24

70.89

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Query:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE
        D IENGTRDQ SDALVN+LN+HF+KCQQLLNSISGSL SK MTV+GQK+ +EE EQLL  RR+LI +Y+ S+EE+V  E
Subjt:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE

Arabidopsis top hits

e value

%identity

Alignment

AT1G29580.1 unknown protein

1.4e-06

44.29

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Query:  QSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP
        Q   L + L    E  + +  S +   +S A+ V+ QK+ LEE EQLL  R ELI +YK SVEE+VK EP
Subjt:  QSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP

AT1G55080.1 MED9

2.4e-25

70.89

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Query:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE
        D IENGTRDQ SDALVN+LN+HF+KCQQLLNSISGSL SK MTV+GQK+ +EE EQLL  RR+LI +Y+ S+EE+V  E
Subjt:  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGE

Sequences

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CDS sequence

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ATGGATTTCCCTGGAGGAGGAAACTGGACGGATGCAATCGAGAATGGAACTAGAGATCAGCAATCTGATGCATTGGTTAATGATCTAAATAACCATTTTGAGAAGTGCCA
GCAGCTGTTGAACTCAATATCTGGATCACTCAGCTCGAAGGCTATGACAGTAGAGGGACAGAAGAAAAAGCTAGAAGAACATGAGCAGTTATTAAGTCATCGAAGGGAAT
TGATTGGGAAATATAAGAACTCTGTTGAAGAGCTTGTCAAGGGGGAGCCCTAG

mRNA sequence

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Protein sequence

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MDFPGGGNWTDAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP

IVF0012399 (gene) of Melon (IVF77) v1 genome