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IVF0012417 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012417
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr11:24441637..24441901
RNA-Seq ExpressionIVF0012417
SyntenyIVF0012417
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035261.1 gag/pol protein [Cucumis melo var. makuwa]4.44e-23100Show/hide
Query:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG
        MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG
Subjt:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG

KAA0050332.1 gag/pol protein [Cucumis melo var. makuwa]1.55e-1577.36Show/hide
Query:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG
        M KGKEVEANVAT EK+LVGGSSSKT+VG   +KK +KGKTPKNSK KKV KG
Subjt:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG

TYK02145.1 gag/pol protein [Cucumis melo var. makuwa]5.47e-1679.25Show/hide
Query:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG
        + KGK+VE NVAT+EKKLV GSSSKT+VGPS MKK RKGKTPKNSK KKV KG
Subjt:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG

TYK08781.1 gag/pol protein [Cucumis melo var. makuwa]5.65e-1679.25Show/hide
Query:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG
        M KGK+VEANV T +K+LVGGSSSKT+VGPS MKK RKGK PKNSK KKVVKG
Subjt:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG

TYK29862.1 gag/pol protein [Cucumis melo var. makuwa]8.12e-1679.25Show/hide
Query:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG
        M KGKEVEAN+AT+EK+LVGGSSSKT+VGPS +KK  KGKTPKNSK KKV KG
Subjt:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG

TrEMBL top hitse value%identityAlignment
A0A5A7T0L9 Gag/pol protein8.1e-1179.25Show/hide
Query:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG
        M KGKEVEAN+AT EK+LVGGSSSKT+VGPS +KK  KGKTPKNSK KKV KG
Subjt:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG

A0A5D3BSJ0 Gag/pol protein8.1e-1179.25Show/hide
Query:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG
        + KGK+VE NVAT+EKKLV GSSSKT+VGPS MKK RKGKTPKNSK KKV KG
Subjt:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG

A0A5D3C8J9 Gag/pol protein3.4e-17100Show/hide
Query:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG
        MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG
Subjt:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG

A0A5D3CA75 Gag/pol protein6.2e-1179.25Show/hide
Query:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG
        M KGK+VEANV T +K+LVGGSSSKT+VGPS MKK RKGK PKNSK KKVVKG
Subjt:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG

A0A5D3E1U5 Gag/pol protein3.6e-1179.25Show/hide
Query:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG
        M KGKEVEAN+AT+EK+LVGGSSSKT+VGPS +KK  KGKTPKNSK KKV KG
Subjt:  MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAAGGGAAAGGAAGTGGAAGCAAATGTTGCTACCTCAGAGAAAAAGTTAGTGGGAGGATCGTCCTCTAAGACTAAAGTTGGACCTTCATTTATGAAGAAGATGAG
AAAGGGGAAGACTCCCAAGAATAGTAAGGAAAAGAAAGTTGTTAAAGGAATTGTCCAAAGTACCTTACTGAAAAGAAAGTTGAGGAGGAAGCACAAGGTAAATACGATTT
ACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTAAGGGAAAGGAAGTGGAAGCAAATGTTGCTACCTCAGAGAAAAAGTTAGTGGGAGGATCGTCCTCTAAGACTAAAGTTGGACCTTCATTTATGAAGAAGATGAG
AAAGGGGAAGACTCCCAAGAATAGTAAGGAAAAGAAAGTTGTTAAAGGAATTGTCCAAAGTACCTTACTGAAAAGAAAGTTGAGGAGGAAGCACAAGGTAAATACGATTT
ACTAG
Protein sequenceShow/hide protein sequence
MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKGIVQSTLLKRKLRRKHKVNTIY