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IVF0012432 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012432
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr07:19460011..19460775
RNA-Seq ExpressionIVF0012432
SyntenyIVF0012432
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038979.1 uncharacterized protein E6C27_scaffold84G00600 [Cucumis melo var. makuwa]9.76e-8266.35Show/hide
Query:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSH----------------------------
        MVGSASTNFS+VITIGERIEFGVKNGRI+D +SE RRMM+  KKEEEIHELSSTQRVVHVSSPT+ QTNYS+                            
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSH----------------------------

Query:  -----------------IGHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLS
                         +GHS ENCFPLKAKVQSLVKAGWLKFKK  E+S++NQNPLPNHEGP IN+VDTFTERYKNK+CDVTTSMNTLFQILR  GYLS
Subjt:  -----------------IGHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLS

Query:  QRFNNDRG
         RFNND G
Subjt:  QRFNNDRG

KAA0055146.1 uncharacterized protein E6C27_scaffold231G00770 [Cucumis melo var. makuwa]6.83e-7558.4Show/hide
Query:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSH----------------------------
        MVGSASTNFS+VITIGERIEFGVKNGRI+D +SE RRMMT  KKEEEIHELSSTQRVVHVSSP + QTNYS+                            
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSH----------------------------

Query:  -----------------------------------------------IGHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDT
                                                       +GHS ENCFPLKAKVQSLVKAGWLKFKKI E+S++NQNPLPNHEGP IN+VDT
Subjt:  -----------------------------------------------IGHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDT

Query:  FTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNNDRG
        FTERYKNK+CDVTTSMNTLFQILR  GYLS RFNND G
Subjt:  FTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNNDRG

KAA0063019.1 uncharacterized protein E6C27_scaffold468G001210 [Cucumis melo var. makuwa]3.68e-7867Show/hide
Query:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSH----------------------------
        MVGSASTNFS+VIT+GE+IEFGVKNGRI+D +SE RRMMT  KKEEEIHELSSTQRVVHVSSPT+ QTNYS+                            
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSH----------------------------

Query:  ------IGHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNNDRGRSL
              + HS ENCFPLKAKVQSLVKAGWLKFKK  E+S++NQNP P HEGP IN+VDTFT+RYKNK+CDVTTSMNTLFQILR  GYLS RFNND+G  L
Subjt:  ------IGHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNNDRGRSL

TYK16525.1 uncharacterized protein E5676_scaffold21G003390 [Cucumis melo var. makuwa]3.45e-11181.28Show/hide
Query:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSH----------------------------
        MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSH                            
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSH----------------------------

Query:  ------------IGHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNN
                    +GHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNN
Subjt:  ------------IGHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNN

Query:  DRGRSLDAPTRSSVYSTLR
        DRGRSLDAPTRSSVYSTLR
Subjt:  DRGRSLDAPTRSSVYSTLR

TYK28914.1 Gag-pro-like protein [Cucumis melo var. makuwa]2.89e-9982.07Show/hide
Query:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYS-----HIGHSMENCFPLKAKVQSLVKAGW
        MVGSASTNFS+VITIGERIEFGVKNGRITDSSSETRRMMT  KKEEEIHELSSTQRVVHV SP + QTNYS      +G+S ENCFPL+AKVQSLVKA W
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYS-----HIGHSMENCFPLKAKVQSLVKAGW

Query:  LKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNNDRGRSLDAPTRSSVYSTLR
        LKFKK GE+ ++NQNPLPN+EGPTINVVDTF ERYKN++CDVTTSMN LFQIL G GYLS RFNND GRSLD PTRSSVYSTLR
Subjt:  LKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNNDRGRSLDAPTRSSVYSTLR

TrEMBL top hitse value%identityAlignment
A0A5A7TCG9 Uncharacterized protein7.3e-6666.35Show/hide
Query:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSH----------------------------
        MVGSASTNFS+VITIGERIEFGVKNGRI+D +SE RRMM+  KKEEEIHELSSTQRVVHVSSPT+ QTNYS+                            
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSH----------------------------

Query:  -----------------IGHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLS
                         +GHS ENCFPLKAKVQSLVKAGWLKFKK  E+S++NQNPLPNHEGP IN+VDTFTERYKNK+CDVTTSMNTLFQILR  GYLS
Subjt:  -----------------IGHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLS

Query:  QRFNNDRG
         RFNND G
Subjt:  QRFNNDRG

A0A5A7ULI2 Retrotrans_gag domain-containing protein9.9e-6358.4Show/hide
Query:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSH----------------------------
        MVGSASTNFS+VITIGERIEFGVKNGRI+D +SE RRMMT  KKEEEIHELSSTQRVVHVSSP + QTNYS+                            
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSH----------------------------

Query:  -----------------------------------------------IGHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDT
                                                       +GHS ENCFPLKAKVQSLVKAGWLKFKKI E+S++NQNPLPNHEGP IN+VDT
Subjt:  -----------------------------------------------IGHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDT

Query:  FTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNNDRG
        FTERYKNK+CDVTTSMNTLFQILR  GYLS RFNND G
Subjt:  FTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNNDRG

A0A5A7VBN6 Retrotrans_gag domain-containing protein4.7e-6567Show/hide
Query:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSH----------------------------
        MVGSASTNFS+VIT+GE+IEFGVKNGRI+D +SE RRMMT  KKEEEIHELSSTQRVVHVSSPT+ QTNYS+                            
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSH----------------------------

Query:  ------IGHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNNDRGRSL
              + HS ENCFPLKAKVQSLVKAGWLKFKK  E+S++NQNP P HEGP IN+VDTFT+RYKNK+CDVTTSMNTLFQILR  GYLS RFNND+G  L
Subjt:  ------IGHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNNDRGRSL

A0A5D3CYF0 Retrotrans_gag domain-containing protein4.7e-8981.28Show/hide
Query:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSH----------------------------
        MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSH                            
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSH----------------------------

Query:  ------------IGHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNN
                    +GHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNN
Subjt:  ------------IGHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNN

Query:  DRGRSLDAPTRSSVYSTLR
        DRGRSLDAPTRSSVYSTLR
Subjt:  DRGRSLDAPTRSSVYSTLR

A0A5D3DZH7 Gag-pro-like protein9.2e-7782.07Show/hide
Query:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYS-----HIGHSMENCFPLKAKVQSLVKAGW
        MVGSASTNFS+VITIGERIEFGVKNGRITDSSSETRRMMT  KKEEEIHELSSTQRVVHV SP + QTNYS      +G+S ENCFPL+AKVQSLVKA W
Subjt:  MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYS-----HIGHSMENCFPLKAKVQSLVKAGW

Query:  LKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNNDRGRSLDAPTRSSVYSTLR
        LKFKK GE+ ++NQNPLPN+EGPTINVVDTF ERYKN++CDVTTSMN LFQIL G GYLS RFNND GRSLD PTRSSVYSTLR
Subjt:  LKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNNDRGRSLDAPTRSSVYSTLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGAAGTGCTTCGACTAATTTCTCGAACGTCATAACAATTGGGGAAAGAATTGAATTTGGAGTGAAGAATGGAAGGATCACCGATTCTTCTTCAGAGACAAGAAG
GATGATGACCTCAAATAAAAAAGAGGAAGAAATTCATGAGTTGAGCTCGACTCAAAGGGTAGTGCATGTATCCTCACCAACTATGAGGCAAACAAATTACTCTCATATTG
GGCATTCTATGGAGAACTGTTTTCCTTTGAAAGCTAAAGTGCAAAGTCTAGTCAAGGCTGGATGGTTGAAATTCAAGAAGATAGGAGAAGATTCTAACATTAACCAGAAC
CCTTTACCAAATCATGAGGGTCCCACCATAAATGTTGTTGACACATTCACGGAAAGATACAAGAATAAGATGTGTGATGTGACTACTTCAATGAATACACTTTTCCAAAT
CCTTCGTGGAGTTGGATATTTGTCACAAAGGTTTAACAATGATAGGGGGAGAAGTTTGGATGCACCAACGAGAAGCAGTGTTTATTCCACCCTGAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGAAGTGCTTCGACTAATTTCTCGAACGTCATAACAATTGGGGAAAGAATTGAATTTGGAGTGAAGAATGGAAGGATCACCGATTCTTCTTCAGAGACAAGAAG
GATGATGACCTCAAATAAAAAAGAGGAAGAAATTCATGAGTTGAGCTCGACTCAAAGGGTAGTGCATGTATCCTCACCAACTATGAGGCAAACAAATTACTCTCATATTG
GGCATTCTATGGAGAACTGTTTTCCTTTGAAAGCTAAAGTGCAAAGTCTAGTCAAGGCTGGATGGTTGAAATTCAAGAAGATAGGAGAAGATTCTAACATTAACCAGAAC
CCTTTACCAAATCATGAGGGTCCCACCATAAATGTTGTTGACACATTCACGGAAAGATACAAGAATAAGATGTGTGATGTGACTACTTCAATGAATACACTTTTCCAAAT
CCTTCGTGGAGTTGGATATTTGTCACAAAGGTTTAACAATGATAGGGGGAGAAGTTTGGATGCACCAACGAGAAGCAGTGTTTATTCCACCCTGAGATAG
Protein sequenceShow/hide protein sequence
MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVVHVSSPTMRQTNYSHIGHSMENCFPLKAKVQSLVKAGWLKFKKIGEDSNINQN
PLPNHEGPTINVVDTFTERYKNKMCDVTTSMNTLFQILRGVGYLSQRFNNDRGRSLDAPTRSSVYSTLR