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IVF0012444 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012444
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description30S ribosomal protein S12, chloroplastic
Genome locationchr04:7287970..7288248
RNA-Seq ExpressionIVF0012444
SyntenyIVF0012444
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF2058444.1 unnamed protein product [Brassica napus]3.89e-3476.74Show/hide
Query:  PLSNKDSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL
        PLS K   +     +ALRKV RV LTS FEI AYIPGI HNLQEHSVVLVR GRVKDL GVRYHIVRGTLD+VGVKDRQQGRSS L
Subjt:  PLSNKDSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL

QUI76316.1 ribosomal protein S12 [Moricandia arvensis]3.93e-3473.03Show/hide
Query:  SNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL
        SNK  +   + + +   +ALRKV RV LTS FEI AYIPGI HNLQEHSVVLVR GRVKDL GVRYHIVRGTLD+VGVKDRQQGRSS L
Subjt:  SNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL

QVD39936.1 ribosomal protein S12 [Maerua crassifolia]2.47e-3473.56Show/hide
Query:  KPLSNKDSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL
        +P+   D+ + +   +ALRKV RV LTS FEI AYIPGI HNLQEHSVVLVR GRVKDL GVRYHIVRGTLD+VGVKDRQQGRSS L
Subjt:  KPLSNKDSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL

YP_009000356.1 rps12 protein [Arabis alpina]3.93e-3473.03Show/hide
Query:  SNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL
        SNK  +   + + +   +ALRKV RV LTS FEI AYIPGI HNLQEHSVVLVR GRVKDL GVRYHIVRGTLD+VGVKDRQQGRSS L
Subjt:  SNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL

YP_009353774.1 ribosomal protein S12 [Alyssum desertorum]3.93e-3473.03Show/hide
Query:  SNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL
        SNK  +   + + +   +ALRKV RV LTS FEI AYIPGI HNLQEHSVVLVR GRVKDL GVRYHIVRGTLD+VGVKDRQQGRSS L
Subjt:  SNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL

TrEMBL top hitse value%identityAlignment
A0A161AMT2 Ribosomal protein S121.9e-2577.78Show/hide
Query:  DSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL
        D+ + +   +ALRKV RV LTS FEI AYIPGI HNLQEHSVVLVR GRVKDL GVRYHIVRGTLD+VGVKDRQQGRSS L
Subjt:  DSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL

A0A1U9XLI2 Ribosomal protein S121.4e-2573.03Show/hide
Query:  SNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL
        SNK  +   + + +   +ALRKV RV LTS FEI AYIPGI HNLQEHSVVLVR GRVKDL GVRYHIVRGTLD+VGVKDRQQGRSS L
Subjt:  SNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL

A0A6H0MXN0 Ribosomal protein S121.4e-2573.03Show/hide
Query:  SNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL
        SNK  +   + + +   +ALRKV RV LTS FEI AYIPGI HNLQEHSVVLVR GRVKDL GVRYHIVRGTLD+VGVKDRQQGRSS L
Subjt:  SNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL

A0A6M8PM28 Ribosomal protein S121.9e-2577.78Show/hide
Query:  DSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL
        D+ + +   +ALRKV RV LTS FEI AYIPGI HNLQEHSVVLVR GRVKDL GVRYHIVRGTLD+VGVKDRQQGRSS L
Subjt:  DSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL

W0USV5 Rps12 protein1.4e-2573.03Show/hide
Query:  SNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL
        SNK  +   + + +   +ALRKV RV LTS FEI AYIPGI HNLQEHSVVLVR GRVKDL GVRYHIVRGTLD+VGVKDRQQGRSS L
Subjt:  SNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL

SwissProt top hitse value%identityAlignment
A4QJV5 30S ribosomal protein S12-A, chloroplastic1.3e-2686.96Show/hide
Query:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRS
        +ALRKV RV LTS FEI AYIPGI HNLQEHSVVLVR GRVKDL GVRYHIVRGTLD+VGVKDRQQGRS
Subjt:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRS

A4QJX7 30S ribosomal protein S12-B, chloroplastic1.3e-2686.96Show/hide
Query:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRS
        +ALRKV RV LTS FEI AYIPGI HNLQEHSVVLVR GRVKDL GVRYHIVRGTLD+VGVKDRQQGRS
Subjt:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRS

Q0G9J5 30S ribosomal protein S12, chloroplastic5.6e-2784.72Show/hide
Query:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL
        +ALRKV RV LTS FEI AYIPGI HN QEHSVVLVR GRVKDL GVRYHIVRGTLD+VGVKDRQQGRSS L
Subjt:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL

Q1KXY0 30S ribosomal protein S12, chloroplastic5.6e-2784.72Show/hide
Query:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL
        +ALRKV RV LTS FEI AYIPGI HN QEHSVVLVR GRVKDL GVRYHIVRGTLD+VGVKDRQQGRSS L
Subjt:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL

Q332V3 30S ribosomal protein S12, chloroplastic5.6e-2784.72Show/hide
Query:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL
        +ALRKV RV LTS FEI AYIPGI HN QEHSVVLVR GRVKDL GVRYHIVRGTLD+VGVKDRQQGRSS L
Subjt:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein5.1e-1552.17Show/hide
Query:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRS
        +A RK+ +V L++R +I A+IPG  HN QEHS VL+R GRVKD  GV+ H +RG  D +G+  R++GRS
Subjt:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRS

ATCG00065.1 ribosomal protein S12A8.9e-2886.96Show/hide
Query:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRS
        +ALRKV RV LTS FEI AYIPGI HNLQEHSVVLVR GRVKDL GVRYHIVRGTLD+VGVKDRQQGRS
Subjt:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRS

ATCG00905.1 ribosomal protein S12C8.9e-2886.96Show/hide
Query:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRS
        +ALRKV RV LTS FEI AYIPGI HNLQEHSVVLVR GRVKDL GVRYHIVRGTLD+VGVKDRQQGRS
Subjt:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRS

ATCG01230.1 ribosomal protein S12B8.9e-2886.96Show/hide
Query:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRS
        +ALRKV RV LTS FEI AYIPGI HNLQEHSVVLVR GRVKDL GVRYHIVRGTLD+VGVKDRQQGRS
Subjt:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRS

ATMG00980.1 Ribosomal protein S12/S23 family protein5.1e-1552.17Show/hide
Query:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRS
        +A RK+ +V L++R +I A+IPG  HN QEHS VL+R GRVKD  GV+ H +RG  D +G+  R++GRS
Subjt:  TALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTAGATCGAATAAGCCCTTATCGAATAAAGATTCAGCCTCTTGTGAACCCTCAGGGACTGCCTTACGTAAAGTTGTCAGAGTATGCTTAACCTCGAGATTTGAAAT
CAATGCTTATATACCTGGTATTGACCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGATGGGGAAGGGTTAAGGATTTATCCGGTGTGAGATATCACATTGTTCGAG
GAACCTTAGATTCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGTGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTAGATCGAATAAGCCCTTATCGAATAAAGATTCAGCCTCTTGTGAACCCTCAGGGACTGCCTTACGTAAAGTTGTCAGAGTATGCTTAACCTCGAGATTTGAAAT
CAATGCTTATATACCTGGTATTGACCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGATGGGGAAGGGTTAAGGATTTATCCGGTGTGAGATATCACATTGTTCGAG
GAACCTTAGATTCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGTGTTGTAG
Protein sequenceShow/hide protein sequence
MIRSNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEINAYIPGIDHNLQEHSVVLVRWGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL