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IVF0012473 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012473
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:22129204..22129788
RNA-Seq ExpressionIVF0012473
SyntenyIVF0012473
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031630.1 hypothetical protein E6C27_scaffold139G003990 [Cucumis melo var. makuwa]8.54e-2665.52Show/hide
Query:  MLQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQS------RSNATKKIVIS----NMIIISNIDHREDHLSPICCSSEHDDDSTS
        MLQPRRSSSQICCNRE  HLKYV  EKI+ISNMLQS      ++   KK+ I       IIISNIDHR+DH S +CCSSEHD+DSTS
Subjt:  MLQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQS------RSNATKKIVIS----NMIIISNIDHREDHLSPICCSSEHDDDSTS

KAA0054617.1 hypothetical protein E6C27_scaffold24G004190 [Cucumis melo var. makuwa]1.23e-5373.88Show/hide
Query:  MLQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQSR-SNATKKIVISNMIIISNIDHREDHLSPICCSSEHDDDSTSRPLTLQNDDDGESSPAFLQVDG
        MLQ RRSSSQICCNRE  HLKYVAA+KI ISN +Q R S   + +  +  ++ISNI             SEHDDDSTSRPLTLQNDDDGESSPAFLQVDG
Subjt:  MLQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQSR-SNATKKIVISNMIIISNIDHREDHLSPICCSSEHDDDSTSRPLTLQNDDDGESSPAFLQVDG

Query:  RVASPLPIQEDDESIASPLSIQEDDDDATLPPPL
        RVASPLPIQEDDESIASPLSIQEDDDDATLPPPL
Subjt:  RVASPLPIQEDDESIASPLSIQEDDDDATLPPPL

KAA0054621.1 hypothetical protein E6C27_scaffold24G004240 [Cucumis melo var. makuwa]3.10e-2453.57Show/hide
Query:  LQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQSRSNATKKIVISNMIIISNIDHREDHLSPICCSSEHDDDSTSRPLTLQ-------NDDDGESSPAF
        LQ RRS SQICC++E  HL+YV  EK+VISNML+SR    +K++IS M+      HREDH SP+C S EHD+DSTSRP TLQ        DDDG + P  
Subjt:  LQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQSRSNATKKIVISNMIIISNIDHREDHLSPICCSSEHDDDSTSRPLTLQ-------NDDDGESSPAF

Query:  LQVDGRVASPLP
        LQ D   A+  P
Subjt:  LQVDGRVASPLP

KAA0057644.1 hypothetical protein E6C27_scaffold43054G00140 [Cucumis melo var. makuwa]2.00e-3560.45Show/hide
Query:  MLQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQSRSNATKKIVISNMIIISNIDHREDHLSPICCSSEHDDDSTSRPLTLQNDDDGESSPAFLQVD-G
        MLQ R  SS I  +RE  H +YVA+ K             +  I     IIISN DHR DH SPICCSS+HDDDSTSRP TLQNDDDGE+ P  LQVD  
Subjt:  MLQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQSRSNATKKIVISNMIIISNIDHREDHLSPICCSSEHDDDSTSRPLTLQNDDDGESSPAFLQVD-G

Query:  RVASPLPIQEDDESIASPLSIQEDDDDATLPPPL
        R AS L IQED+ SIASPLSIQEDDDDA L P L
Subjt:  RVASPLPIQEDDESIASPLSIQEDDDDATLPPPL

TYK19526.1 hypothetical protein E5676_scaffold416G00170 [Cucumis melo var. makuwa]2.00e-3560.45Show/hide
Query:  MLQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQSRSNATKKIVISNMIIISNIDHREDHLSPICCSSEHDDDSTSRPLTLQNDDDGESSPAFLQVD-G
        MLQ R  SS I  +RE  H +YVA+ K             +  I     IIISN DHR DH SPICCSS+HDDDSTSRP TLQNDDDGE+ P  LQVD  
Subjt:  MLQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQSRSNATKKIVISNMIIISNIDHREDHLSPICCSSEHDDDSTSRPLTLQNDDDGESSPAFLQVD-G

Query:  RVASPLPIQEDDESIASPLSIQEDDDDATLPPPL
        R AS L IQED+ SIASPLSIQEDDDDA L P L
Subjt:  RVASPLPIQEDDESIASPLSIQEDDDDATLPPPL

TrEMBL top hitse value%identityAlignment
A0A5A7UM54 Uncharacterized protein4.2e-1853.57Show/hide
Query:  LQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQSRSNATKKIVISNMIIISNIDHREDHLSPICCSSEHDDDSTSRPLTLQ-------NDDDGESSPAF
        LQ RRS SQICC++E  HL+YV  EK+VISNML+SR    +K++IS M+      HREDH SP+C S EHD+DSTSRP TLQ        DDDG + P  
Subjt:  LQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQSRSNATKKIVISNMIIISNIDHREDHLSPICCSSEHDDDSTSRPLTLQ-------NDDDGESSPAF

Query:  LQVDGRVASPLP
        LQ D   A+  P
Subjt:  LQVDGRVASPLP

A0A5A7URA3 Uncharacterized protein6.5e-2760.45Show/hide
Query:  MLQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQSRSNATKKIVISNMIIISNIDHREDHLSPICCSSEHDDDSTSRPLTLQNDDDGESSPAFLQVD-G
        MLQ R  SS I  +RE  H +YVA+ K             +  I     IIISN DHR DH SPICCSS+HDDDSTSRP TLQNDDDGE+ P  LQVD  
Subjt:  MLQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQSRSNATKKIVISNMIIISNIDHREDHLSPICCSSEHDDDSTSRPLTLQNDDDGESSPAFLQVD-G

Query:  RVASPLPIQEDDESIASPLSIQEDDDDATLPPPL
        R AS L IQED+ SIASPLSIQEDDDDA L P L
Subjt:  RVASPLPIQEDDESIASPLSIQEDDDDATLPPPL

A0A5D3BZN7 Uncharacterized protein5.0e-1965.52Show/hide
Query:  MLQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQS------RSNATKKIVIS----NMIIISNIDHREDHLSPICCSSEHDDDSTS
        MLQPRRSSSQICCNRE  HLKYV  EKI+ISNMLQS      ++   KK+ I       IIISNIDHR+DH S +CCSSEHD+DSTS
Subjt:  MLQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQS------RSNATKKIVIS----NMIIISNIDHREDHLSPICCSSEHDDDSTS

A0A5D3D7G6 Uncharacterized protein6.5e-2760.45Show/hide
Query:  MLQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQSRSNATKKIVISNMIIISNIDHREDHLSPICCSSEHDDDSTSRPLTLQNDDDGESSPAFLQVD-G
        MLQ R  SS I  +RE  H +YVA+ K             +  I     IIISN DHR DH SPICCSS+HDDDSTSRP TLQNDDDGE+ P  LQVD  
Subjt:  MLQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQSRSNATKKIVISNMIIISNIDHREDHLSPICCSSEHDDDSTSRPLTLQNDDDGESSPAFLQVD-G

Query:  RVASPLPIQEDDESIASPLSIQEDDDDATLPPPL
        R AS L IQED+ SIASPLSIQEDDDDA L P L
Subjt:  RVASPLPIQEDDESIASPLSIQEDDDDATLPPPL

A0A5D3DVX9 Uncharacterized protein6.0e-4173.88Show/hide
Query:  MLQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQ-SRSNATKKIVISNMIIISNIDHREDHLSPICCSSEHDDDSTSRPLTLQNDDDGESSPAFLQVDG
        MLQ RRSSSQICCNRE  HLKYVAA+KI ISN +Q  RS   + +  +  ++ISNI             SEHDDDSTSRPLTLQNDDDGESSPAFLQVDG
Subjt:  MLQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQ-SRSNATKKIVISNMIIISNIDHREDHLSPICCSSEHDDDSTSRPLTLQNDDDGESSPAFLQVDG

Query:  RVASPLPIQEDDESIASPLSIQEDDDDATLPPPL
        RVASPLPIQEDDESIASPLSIQEDDDDATLPPPL
Subjt:  RVASPLPIQEDDESIASPLSIQEDDDDATLPPPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAGCCAAGAAGATCATCATCTCAAATATGTTGCAATCGAGAAGGTTGTCATCTTAAATATGTTGCAGCTGAGAAGATCGTCATCTCAAATATGTTGCAA
TCGAGAAGCAATGCAACCAAGAAGATCGTCATCTCAAATATGATCATCATCTCCAATATCGACCATCGAGAGGATCATTTATCTCCAATATGTTGCAGCTCCGAG
CATGATGATGATAGTACATCTCGACCTCTAACTCTCCAAAATGATGACGATGGTGAATCTTCGCCTGCATTTCTCCAAGTAGATGGTCGTGTTGCTTCGCCTCTG
CCTATCCAAGAAGACGATGAGAGTATAGCTTCACCTCTATCTATCCAAGAAGATGACGATGATGCAACTTTACCTCCACCTCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCAGCCAAGAAGATCATCATCTCAAATATGTTGCAATCGAGAAGGTTGTCATCTTAAATATGTTGCAGCTGAGAAGATCGTCATCTCAAATATGTTGCAA
TCGAGAAGCAATGCAACCAAGAAGATCGTCATCTCAAATATGATCATCATCTCCAATATCGACCATCGAGAGGATCATTTATCTCCAATATGTTGCAGCTCCGAG
CATGATGATGATAGTACATCTCGACCTCTAACTCTCCAAAATGATGACGATGGTGAATCTTCGCCTGCATTTCTCCAAGTAGATGGTCGTGTTGCTTCGCCTCTG
CCTATCCAAGAAGACGATGAGAGTATAGCTTCACCTCTATCTATCCAAGAAGATGACGATGATGCAACTTTACCTCCACCTCTCTAA
Protein sequenceShow/hide protein sequence
MLQPRRSSSQICCNREGCHLKYVAAEKIVISNMLQSRSNATKKIVISNMIIISNIDHREDHLSPICCSSEHDDDSTSRPLTLQNDDDGESSPAFLQVDGRVASPL
PIQEDDESIASPLSIQEDDDDATLPPPL