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IVF0012490 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012490
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass, expressed
Genome locationchr01:25320679..25325527
RNA-Seq ExpressionIVF0012490
SyntenyIVF0012490
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051945.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]5.46e-1261.82Show/hide
Query:  GLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLPSLIFPKYRSGSEHIGRRTKVEP
        G +TV LF IGHKCFEL D Y E+F+LH WH PS I+ KYRSGSE  GR+ +  P
Subjt:  GLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLPSLIFPKYRSGSEHIGRRTKVEP

KAA0057641.1 hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa]2.33e-1745.9Show/hide
Query:  FQGRKQTKLKKFWCSSQENAKENAPDSIFLSRGKKRSCDGFFVFGLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLPSLIFPKYRSGSEHIGRRTKVEPK
         Q RKQT+LK FWCSSQENA +NAPDS F S GKKRS  GFF        L  IGHK F+L+  Y EDF+ H WH               +      + K
Subjt:  FQGRKQTKLKKFWCSSQENAKENAPDSIFLSRGKKRSCDGFFVFGLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLPSLIFPKYRSGSEHIGRRTKVEPK

Query:  TIEKMANTPPTSCEGSSGVRNH
          ++    P TS E SSG+RNH
Subjt:  TIEKMANTPPTSCEGSSGVRNH

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]2.40e-1955.91Show/hide
Query:  QRVANARPVLETTKNTFQGRKQTKLKKFWCSSQENAKENAPDSIFLSRGKKRSCDGFFVFGLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLP
        QRV NARPV ETT N    +K+ +LK FWCSSQENA EN  DS+F S GKK+S DGFF        L  IGHK  + R  YSEDF+ + WH P
Subjt:  QRVANARPVLETTKNTFQGRKQTKLKKFWCSSQENAKENAPDSIFLSRGKKRSCDGFFVFGLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLP

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]3.11e-1247.78Show/hide
Query:  RKQTKLKKFWCSSQENAKENAPDSIFLSRGKKRSCDGFFVFGLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLPSLIFPKYRSGSEHIGR
        RK+ K K FWC SQE+A +N+ DS+  SRGKKR  +GFFV       L  +G+KCFEL D  SEDF LH  H  S + P     +  +GR
Subjt:  RKQTKLKKFWCSSQENAKENAPDSIFLSRGKKRSCDGFFVFGLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLPSLIFPKYRSGSEHIGR

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]7.78e-4264.62Show/hide
Query:  LHQRVANARPVLETTKNTFQGRKQTKLKKFWCSSQENAKENAPDSIFLSRGKKRSCDGFFVFGLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLPSLIFP
        L QRVANARPV    K+ FQ  K  KLK FWCSSQE+A ENAPDS+FLS  KKRSCDGF V       L C+GHK FEL+D YSEDFSLH W  PS +F 
Subjt:  LHQRVANARPVLETTKNTFQGRKQTKLKKFWCSSQENAKENAPDSIFLSRGKKRSCDGFFVFGLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLPSLIFP

Query:  KYRSGSEHIGRRTKVEPKTIEKMANTPPTS
        KYR+GS+ +  RTKV+  TIEKMANT PTS
Subjt:  KYRSGSEHIGRRTKVEPKTIEKMANTPPTS

TrEMBL top hitse value%identityAlignment
A0A5A7UVV0 Uncharacterized protein2.3e-1447.11Show/hide
Query:  QGRKQTKLKKFWCSSQENAKENAPDSIFLSRGKKRSCDGFFVFGLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLPSLIFPKYRSGSEHIGRRTKVEPKT
        Q RKQT+LK FWCSSQENA +NAPDS F S GKKRS  GFF        L  IGHK F+L+  Y EDF+ H WH           G     ++       
Subjt:  QGRKQTKLKKFWCSSQENAKENAPDSIFLSRGKKRSCDGFFVFGLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLPSLIFPKYRSGSEHIGRRTKVEPKT

Query:  IEKMANTPPTSCEGSSGVRNH
          K     PTS E SSG+RNH
Subjt:  IEKMANTPPTSCEGSSGVRNH

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein1.5e-1655.91Show/hide
Query:  QRVANARPVLETTKNTFQGRKQTKLKKFWCSSQENAKENAPDSIFLSRGKKRSCDGFFVFGLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLP
        QRV NARPV ETT N    +K+ +LK FWCSSQENA EN  DS+F S GKK+S DGFF        L  IGHK  + R  YSEDF+ + WH P
Subjt:  QRVANARPVLETTKNTFQGRKQTKLKKFWCSSQENAKENAPDSIFLSRGKKRSCDGFFVFGLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLP

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed8.2e-3664.62Show/hide
Query:  LHQRVANARPVLETTKNTFQGRKQTKLKKFWCSSQENAKENAPDSIFLSRGKKRSCDGFFVFGLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLPSLIFP
        L QRVANARPV    K+ FQ  K  KLK FWCSSQE+A ENAPDS+FLS  KKRSCDGF V       L C+GHK FEL+D YSEDFSLH W  PS +F 
Subjt:  LHQRVANARPVLETTKNTFQGRKQTKLKKFWCSSQENAKENAPDSIFLSRGKKRSCDGFFVFGLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLPSLIFP

Query:  KYRSGSEHIGRRTKVEPKTIEKMANTPPTS
        KYR+GS+ +  RTKV+  TIEKMANT PTS
Subjt:  KYRSGSEHIGRRTKVEPKTIEKMANTPPTS

A0A5A7VGQ5 Uncharacterized protein1.6e-1047.78Show/hide
Query:  RKQTKLKKFWCSSQENAKENAPDSIFLSRGKKRSCDGFFVFGLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLPSLIFPKYRSGSEHIGR
        RK+ K K FWC SQE+A +N+ DS+  SRGKKR  +GFFV       L  +G+KCFEL D  SEDF LH  H  S + P     +  +GR
Subjt:  RKQTKLKKFWCSSQENAKENAPDSIFLSRGKKRSCDGFFVFGLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLPSLIFPKYRSGSEHIGR

A0A5D3CKZ2 Pentatricopeptide repeat-containing protein3.8e-0961.82Show/hide
Query:  GLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLPSLIFPKYRSGSEHIGRRTKVEP
        G +TV LF IGHKCFEL D Y E+F+LH WH PS I+ KYRSGSE  GR+ +  P
Subjt:  GLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLPSLIFPKYRSGSEHIGRRTKVEP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAGCTCCACCAACGAGTGGCGAACGCTCGTCCGGTGTTAGAGACCACTAAAAATACCTTTCAGGGAAGGAAACAGACTAAGCTCAAGAAGTTTTGGTGT
TCATCCCAGGAAAATGCGAAAGAGAATGCCCCTGACTCCATTTTTCTATCGCGGGGTAAAAAACGATCCTGCGATGGTTTCTTTGTTTTCGGTCTTACGACAGTT
TCTTTGTTTTGTATTGGTCATAAGTGCTTCGAGCTTCGAGACTTATACTCCGAGGACTTTAGTCTACATTTCTGGCATCTTCCCTCACTCATTTTTCCAAAGTAT
AGGTCGGGAAGTGAGCACATTGGAAGGAGAACTAAGGTGGAACCCAAAACAATCGAAAAGATGGCAAATACGCCTCCAACGAGTTGCGAAGGCTCGTCCGGTGTT
AGAAACCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAGCTCCACCAACGAGTGGCGAACGCTCGTCCGGTGTTAGAGACCACTAAAAATACCTTTCAGGGAAGGAAACAGACTAAGCTCAAGAAGTTTTGGTGT
TCATCCCAGGAAAATGCGAAAGAGAATGCCCCTGACTCCATTTTTCTATCGCGGGGTAAAAAACGATCCTGCGATGGTTTCTTTGTTTTCGGTCTTACGACAGTT
TCTTTGTTTTGTATTGGTCATAAGTGCTTCGAGCTTCGAGACTTATACTCCGAGGACTTTAGTCTACATTTCTGGCATCTTCCCTCACTCATTTTTCCAAAGTAT
AGGTCGGGAAGTGAGCACATTGGAAGGAGAACTAAGGTGGAACCCAAAACAATCGAAAAGATGGCAAATACGCCTCCAACGAGTTGCGAAGGCTCGTCCGGTGTT
AGAAACCACTGA
Protein sequenceShow/hide protein sequence
MAKLHQRVANARPVLETTKNTFQGRKQTKLKKFWCSSQENAKENAPDSIFLSRGKKRSCDGFFVFGLTTVSLFCIGHKCFELRDLYSEDFSLHFWHLPSLIFPKY
RSGSEHIGRRTKVEPKTIEKMANTPPTSCEGSSGVRNH