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IVF0012501 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012501
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr09:9048141..9048413
RNA-Seq ExpressionIVF0012501
SyntenyIVF0012501
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037133.1 retrotransposon protein [Cucumis melo var. makuwa]7.65e-0861.22Show/hide
Query:  AMIWVSSSWVF----------KNGIKVGIFVVRRSSFVRGGILKNERGV
        A IWVSS WV           KNG+KVG+F++RRS FVRGGILK ERGV
Subjt:  AMIWVSSSWVF----------KNGIKVGIFVVRRSSFVRGGILKNERGV

KAA0044825.1 transcription factor bHLH36-like [Cucumis melo var. makuwa]7.30e-1278.38Show/hide
Query:  KNGIKVGIFVVRRSSFVRGGILKNERGVCVKKEREGF
        KNG+KVG+FV+ RSSFVRGG+LK +RGV VKKEREGF
Subjt:  KNGIKVGIFVVRRSSFVRGGILKNERGVCVKKEREGF

KAA0048509.1 CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa]1.05e-1051.47Show/hide
Query:  MGTQETEQKVKYLGEEINGGKRNEKRKIKNSSAMIWVSSSWVF----------KNGIKVGIFVVRRSS
        +G +   Q+ + +GE INGG+RNEKRKIKNS   IWVSS WV           KNG+KV +FVV  SS
Subjt:  MGTQETEQKVKYLGEEINGGKRNEKRKIKNSSAMIWVSSSWVF----------KNGIKVGIFVVRRSS

KAA0054034.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.28e-0858.82Show/hide
Query:  MIWVSSSWVF----------KNGIKVGIFVVRRSSFVRGGILKNERGVCVK
        M+WVSS WV           KNG KVG+FV+RRSSFVR GILK E GVC++
Subjt:  MIWVSSSWVF----------KNGIKVGIFVVRRSSFVRGGILKNERGVCVK

TYK21269.1 thioredoxin H1-like isoform X1 [Cucumis melo var. makuwa]2.62e-1467.8Show/hide
Query:  MGTQETEQKVKYLGEEINGGKRNEKRKIKNSSAMIWVSSSWVF----------KNGIKV
        MGTQETEQKVKY GEEIN G+RNEKRKIKNS A IWVSS WV           KNG+K+
Subjt:  MGTQETEQKVKYLGEEINGGKRNEKRKIKNSSAMIWVSSSWVF----------KNGIKV

TrEMBL top hitse value%identityAlignment
A0A5A7T2E4 Retrotransposon protein1.1e-0561.22Show/hide
Query:  AMIWVSSSWVF----------KNGIKVGIFVVRRSSFVRGGILKNERGV
        A IWVSS WV           KNG+KVG+F++RRS FVRGGILK ERGV
Subjt:  AMIWVSSSWVF----------KNGIKVGIFVVRRSSFVRGGILKNERGV

A0A5A7TTV0 Transcription factor bHLH36-like1.5e-0778.38Show/hide
Query:  KNGIKVGIFVVRRSSFVRGGILKNERGVCVKKEREGF
        KNG+KVG+FV+ RSSFVRGG+LK +RGV VKKEREGF
Subjt:  KNGIKVGIFVVRRSSFVRGGILKNERGVCVKKEREGF

A0A5A7U4Z1 CMP-sialic acid transporter 4 isoform X24.5e-0751.47Show/hide
Query:  MGTQETEQKVKYLGEEINGGKRNEKRKIKNSSAMIWVSSSWVF----------KNGIKVGIFVVRRSS
        +G +   Q+ + +GE INGG+RNEKRKIKNS   IWVSS WV           KNG+KV +FVV  SS
Subjt:  MGTQETEQKVKYLGEEINGGKRNEKRKIKNSSAMIWVSSSWVF----------KNGIKVGIFVVRRSS

A0A5A7UFR0 Ty3-gypsy retrotransposon protein6.5e-0658.82Show/hide
Query:  MIWVSSSWVF----------KNGIKVGIFVVRRSSFVRGGILKNERGVCVK
        M+WVSS WV           KNG KVG+FV+RRSSFVR GILK E GVC++
Subjt:  MIWVSSSWVF----------KNGIKVGIFVVRRSSFVRGGILKNERGVCVK

A0A5D3DDC9 Thioredoxin H1-like isoform X15.7e-1067.8Show/hide
Query:  MGTQETEQKVKYLGEEINGGKRNEKRKIKNSSAMIWVSSSWVF----------KNGIKV
        MGTQETEQKVKY GEEIN G+RNEKRKIKNS A IWVSS WV           KNG+K+
Subjt:  MGTQETEQKVKYLGEEINGGKRNEKRKIKNSSAMIWVSSSWVF----------KNGIKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAACACAAGAAACAGAGCAGAAAGTTAAATACCTAGGGGAAGAGATAAACGGAGGAAAAAGAAACGAAAAAAGAAAGATCAAGAACTCATCAGCGATGATATGGGT
CTCCTCGTCGTGGGTCTTTAAGAATGGGATTAAGGTTGGGATTTTCGTCGTGCGTCGTTCATCGTTCGTGAGGGGAGGGATTTTGAAGAATGAAAGGGGAGTGTGCGTGA
AGAAGGAAAGGGAGGGATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAACACAAGAAACAGAGCAGAAAGTTAAATACCTAGGGGAAGAGATAAACGGAGGAAAAAGAAACGAAAAAAGAAAGATCAAGAACTCATCAGCGATGATATGGGT
CTCCTCGTCGTGGGTCTTTAAGAATGGGATTAAGGTTGGGATTTTCGTCGTGCGTCGTTCATCGTTCGTGAGGGGAGGGATTTTGAAGAATGAAAGGGGAGTGTGCGTGA
AGAAGGAAAGGGAGGGATTTTGA
Protein sequenceShow/hide protein sequence
MGTQETEQKVKYLGEEINGGKRNEKRKIKNSSAMIWVSSSWVFKNGIKVGIFVVRRSSFVRGGILKNERGVCVKKEREGF