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IVF0012526 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012526
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTRASH domain-containing protein
Genome locationchr04:30125913..30128189
RNA-Seq ExpressionIVF0012526
SyntenyIVF0012526
Gene Ontology termsNA
InterPro domainsIPR000988 - Ribosomal protein L24e-related


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043915.1 putative ribosome biogenesis protein RLP24 [Cucumis melo var. makuwa]2.41e-57100Show/hide
Query:  MKGCDTGKHEFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        MKGCDTGKHEFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKEDRSLTLPKIKVKVVPSQGEHNQPMEE
Subjt:  MKGCDTGKHEFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKEDRSLTLPKIKVKVVPSQGEHNQPMEE
KAG6596547.1 putative ribosome biogenesis protein RLP24, partial [Cucurbita argyrosperma subsp. sororia]1.10e-2665.66Show/hide
Query:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        EFERKRNRPERYDRN  EE L+AIKKIDKV A RE+RHIA RM+GKK K L+E                 LKED SLTLPKI+VKVV SQ E NQPMEE
Subjt:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE
XP_022976358.1 probable ribosome biogenesis protein RLP24 [Cucurbita maxima]1.56e-2666.67Show/hide
Query:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        EFERKRNRPERYDRN  EE L+AIKKIDKV A RESRHIA RM+GKKAK L E                 LKED SLTLPKIKV V PSQ E NQ MEE
Subjt:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE
XP_038905540.1 probable ribosome biogenesis protein RLP24 isoform X1 [Benincasa hispida]8.03e-2768.69Show/hide
Query:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        EFERKRNRPERYDRN  EE LKAIKKIDKV A RESRHIA R +GKKAK L E                 LKED SLTLPKIKVKVVPSQ E NQ MEE
Subjt:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE
XP_038905541.1 probable ribosome biogenesis protein RLP24 isoform X2 [Benincasa hispida]3.88e-2768.69Show/hide
Query:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        EFERKRNRPERYDRN  EE LKAIKKIDKV A RESRHIA R +GKKAK L E                 LKED SLTLPKIKVKVVPSQ E NQ MEE
Subjt:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE
TrEMBL top hitse value%identityAlignment
A0A5A7TR87 Putative ribosome biogenesis protein RLP249.0e-44100Show/hide
Query:  MKGCDTGKHEFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        MKGCDTGKHEFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKEDRSLTLPKIKVKVVPSQGEHNQPMEE
Subjt:  MKGCDTGKHEFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKEDRSLTLPKIKVKVVPSQGEHNQPMEE
A0A6J1C1W9 probable ribosome biogenesis protein RLP244.8e-2166.67Show/hide
Query:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        EFERKRNRPERYDRN  EE L+AIKKIDKV A RESRHIA RM+GKKAK L+E                 LKED SLTLPKIKVKV  SQ E NQ MEE
Subjt:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE
A0A6J1GEZ5 probable ribosome biogenesis protein RLP241.1e-2064.65Show/hide
Query:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        EFERKRNRPERYDRN  EE L+AIKKIDKV A RE+RHIA RM+GKK K L+E                 LKED SLTLPKI+VKV  SQ E NQPMEE
Subjt:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE
A0A6J1ILW2 probable ribosome biogenesis protein RLP244.8e-2166.67Show/hide
Query:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEE----------------DLKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        EFERKRNRPERYDRN  EE L+AIKKIDKV A RESRHIA RM+GKKAK L E                 LKED SLTLPKIKV V PSQ E NQ MEE
Subjt:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEE----------------DLKEDRSLTLPKIKVKVVPSQGEHNQPMEE
A0A6J1KWV2 probable ribosome biogenesis protein RLP241.1e-2064.65Show/hide
Query:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE
        EFERKRNRPERYDRN  EE L+AIKKIDKV A RE+RHIA RM+GKK K L+E                 LKED SLTLPKI+VKV  SQ E NQPMEE
Subjt:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED----------------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE
SwissProt top hitse value%identityAlignment
O22165 Probable ribosome biogenesis protein RLP245.1e-1247.78Show/hide
Query:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE-DRSLTL------PKIKVKVVPSQGEHNQPMEE
        EFE+KRNRPERYDRN  E  L AIKKI K+   RE++HI  R++  K K L +D+KE D+++ +       KIKV V   +   N+ MEE
Subjt:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE-DRSLTL------PKIKVKVVPSQGEHNQPMEE
Arabidopsis top hitse value%identityAlignment
AT2G44860.1 Ribosomal protein L24e family protein3.6e-1347.78Show/hide
Query:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE-DRSLTL------PKIKVKVVPSQGEHNQPMEE
        EFE+KRNRPERYDRN  E  L AIKKI K+   RE++HI  R++  K K L +D+KE D+++ +       KIKV V   +   N+ MEE
Subjt:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE-DRSLTL------PKIKVKVVPSQGEHNQPMEE
AT2G44860.2 Ribosomal protein L24e family protein3.6e-1347.78Show/hide
Query:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE-DRSLTL------PKIKVKVVPSQGEHNQPMEE
        EFE+KRNRPERYDRN  E  L AIKKI K+   RE++HI  R++  K K L +D+KE D+++ +       KIKV V   +   N+ MEE
Subjt:  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE-DRSLTL------PKIKVKVVPSQGEHNQPMEE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGATGTGACACAGGTAAACATGAGTTTGAGAGGAAGCGCAATAGACCAGAGAGATATGACAGGAATTTCGCCGAAGAGCCATTGAAGGCTATAAAGAAGATTGA
TAAAGTCATAGCGATTAGGGAATCAAGACACATTGCATGGAGAATGCGTGGAAAGAAAGCAAAGGGGCTTGAAGAGGATCTGAAGGAGGATCGTTCCCTCACCCTTCCAA
AGATCAAAGTCAAGGTGGTACCATCACAAGGAGAGCACAATCAGCCTATGGAAGAATGA
mRNA sequenceShow/hide mRNA sequence
TTGGGCATTGTTTTTTATATTATACATGTACTAAATTCTTTCAAAACTATAAAATAGGGGTAAAAAAGAATCAAGAAACAATAAACCAAGAATAGTTGCATTAAATTTTG
GGTTGCTTCAAAAAATATCGTTTGCACGATCCAATCCAACCAGAAAATTTAGGCTTGTATTATTTCAAAAGAAGAACGAGGTTAGGGAAGTGTTGGTTTTGTTCGTCCAC
ATATATTCGGATCATGGTGTTCAGTTTGTTCGCAATGATGCGAGGACTGTAGAAATAGATATGTTTTTCGTTGGGGTCTTAAATTAGTGATGATGGGGAGAACCACATGA
TCAAGATGAAGAGAAATCACCGTAAAGTAAAATGGACCAAGGCATATAGGAGGTTGCATGAAAGGATGTGACACAGGTAAACATGAGTTTGAGAGGAAGCGCAATAGACC
AGAGAGATATGACAGGAATTTCGCCGAAGAGCCATTGAAGGCTATAAAGAAGATTGATAAAGTCATAGCGATTAGGGAATCAAGACACATTGCATGGAGAATGCGTGGAA
AGAAAGCAAAGGGGCTTGAAGAGGATCTGAAGGAGGATCGTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGTGGTACCATCACAAGGAGAGCACAATCAGCCTATGGAA
GAATGAGTTTGTTACTTTTCTTATCTCACTATTTCAAATATTTACTTTTATCACATATCTTCAACTACCACATTTTTTGCACAGCGGCAGATTGCCATTGTCTGTCCTTA
CACACGCATGGTTCTTCTGTAGAAGTTCAATTTGAAAACGC
Protein sequenceShow/hide protein sequence
MKGCDTGKHEFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKEDRSLTLPKIKVKVVPSQGEHNQPMEE