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IVF0012548 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012548
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGeranylgeranyl transferase type-2 subunit beta-like
Genome locationchr01:2767207..2769122
RNA-Seq ExpressionIVF0012548
SyntenyIVF0012548
Gene Ontology termsGO:0018344 - protein geranylgeranylation (biological process)
GO:0005968 - Rab-protein geranylgeranyltransferase complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0004663 - Rab geranylgeranyltransferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR008930 - Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
IPR045089 - Prenyltransferase subunit beta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031621.1 geranylgeranyl transferase type-2 subunit beta-like [Cucumis melo var. makuwa]5.84e-68100Show/hide
Query:  MSGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSFELDHD
        MSGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSFELDHD
Subjt:  MSGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSFELDHD

KAF5939185.1 hypothetical protein HYC85_023444 [Camellia sinensis]1.90e-1980.85Show/hide
Query:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECG
        VFCCVG+LAI GSL HIDKDLLG WLCERQ+KSGG  GRPEKLP+ G
Subjt:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECG

KDO47736.1 hypothetical protein CISIN_1g0213052mg [Citrus sinensis]5.04e-2051.11Show/hide
Query:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSFELDHD
        +FCCVG+LAI G+L H+DKDLLG WLCERQ+KSGG  GRPEKLP+ G                              LLL VGSF+LDHD
Subjt:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSFELDHD

XP_025014717.1 geranylgeranyl transferase type-2 subunit beta 1 [Ricinus communis]7.02e-1973.08Show/hide
Query:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLL
        +FCCVG+LAI GSL H+DKDLLG WLCERQ+KSGG  GRPEKLP+ G  LL+
Subjt:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLL

XP_037497053.1 geranylgeranyl transferase type-2 subunit beta 1-like, partial [Jatropha curcas]4.37e-1977.08Show/hide
Query:  VMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPE
        +++VFCCVG+LAI GSL HIDKDLLG WLCERQ+KSGG  GRPEKLP+
Subjt:  VMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPE

TrEMBL top hitse value%identityAlignment
A0A067EA22 Geranylgeranyl transferase type-2 subunit beta1.4e-1551.11Show/hide
Query:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSFELDHD
        +FCCVG+LAI G+L H+DKDLLG WLCERQ+KSGG  GRPEKLP+ G                              LLL VGSF+LDHD
Subjt:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSFELDHD

A0A5A7SQ05 Geranylgeranyl transferase type-2 subunit beta-like6.2e-51100Show/hide
Query:  MSGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSFELDHD
        MSGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSFELDHD
Subjt:  MSGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSFELDHD

A0A5C7HXV1 Geranylgeranyl transferase type-2 subunit beta2.1e-1470.18Show/hide
Query:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTN
        +FCCVG+LAI G+L H+DKDLLG WLCERQ+KSGG  GRPEKLP+ G  LLL  L N
Subjt:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTN

A0A7J7G0Z0 Geranylgeranyl transferase type-2 subunit beta1.6e-1464.41Show/hide
Query:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSW
        +FCCVG+LAI GSL HIDK+LLG WLCERQ+KSGG  GRPEKLP+ G+      +  SW
Subjt:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSW

A0A7J7GFU3 Uncharacterized protein3.5e-1480.85Show/hide
Query:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECG
        VFCCVG+LAI GSL HIDKDLLG WLCERQ+KSGG  GRPEKLP+ G
Subjt:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECG

SwissProt top hitse value%identityAlignment
P53611 Geranylgeranyl transferase type-2 subunit beta1.3e-1055.77Show/hide
Query:  SGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPE
        S S    ++CC G LAI   L  ++ DLLG WLCERQ+ SGG  GRPEKLP+
Subjt:  SGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPE

P53612 Geranylgeranyl transferase type-2 subunit beta1.3e-1055.77Show/hide
Query:  SGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPE
        S S    ++CC G LAI   L  ++ DLLG WLCERQ+ SGG  GRPEKLP+
Subjt:  SGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPE

Q5E9B3 Geranylgeranyl transferase type-2 subunit beta1.3e-1055.77Show/hide
Query:  SGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPE
        S S    ++CC G LAI   L  ++ DLLG WLCERQ+ SGG  GRPEKLP+
Subjt:  SGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPE

Q84J75 Geranylgeranyl transferase type-2 subunit beta 17.6e-1471.11Show/hide
Query:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPE
        +FCCVG+LAI GSL H+DKD LG WLCERQ+K+GG  GRPEKL +
Subjt:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPE

Q9LHL5 Geranylgeranyl transferase type-2 subunit beta 22.4e-1269.57Show/hide
Query:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQ-IKSGGPRGRPEKLPE
        +FCCVG+LAI G+L  +DKDLLG WLCERQ  +SGG  GRPEKLP+
Subjt:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQ-IKSGGPRGRPEKLPE

Arabidopsis top hitse value%identityAlignment
AT3G12070.1 RAB geranylgeranyl transferase beta subunit 21.7e-1369.57Show/hide
Query:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQ-IKSGGPRGRPEKLPE
        +FCCVG+LAI G+L  +DKDLLG WLCERQ  +SGG  GRPEKLP+
Subjt:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQ-IKSGGPRGRPEKLPE

AT3G12070.2 RAB geranylgeranyl transferase beta subunit 21.7e-1369.57Show/hide
Query:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQ-IKSGGPRGRPEKLPE
        +FCCVG+LAI G+L  +DKDLLG WLCERQ  +SGG  GRPEKLP+
Subjt:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQ-IKSGGPRGRPEKLPE

AT5G12210.1 RAB geranylgeranyl transferase beta subunit 15.4e-1571.11Show/hide
Query:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPE
        +FCCVG+LAI GSL H+DKD LG WLCERQ+K+GG  GRPEKL +
Subjt:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPE

AT5G12210.2 RAB geranylgeranyl transferase beta subunit 15.4e-1571.11Show/hide
Query:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPE
        +FCCVG+LAI GSL H+DKD LG WLCERQ+K+GG  GRPEKL +
Subjt:  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGGTTCTGCTGTGATGTCAGTTTTCTGTTGTGTTGGCTCGCTTGCTATAATGGGTTCTCTACAACATATTGACAAGGATCTCCTTGGCTTGTGGTTATGTGAGCG
GCAAATCAAATCTGGAGGTCCTCGTGGTCGACCCGAGAAACTTCCTGAATGTGGTTTCGAACTCCTATTACATACTCTAACCAATTCTTGGCTTGGAAGTTATTCATACT
CTCCCACTCACCAACTTCATTGTGTTGCTTCAGTTTTGCTACTCACGGTGGGTTCTTTCGAACTTGATCATGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGGTTCTGCTGTGATGTCAGTTTTCTGTTGTGTTGGCTCGCTTGCTATAATGGGTTCTCTACAACATATTGACAAGGATCTCCTTGGCTTGTGGTTATGTGAGCG
GCAAATCAAATCTGGAGGTCCTCGTGGTCGACCCGAGAAACTTCCTGAATGTGGTTTCGAACTCCTATTACATACTCTAACCAATTCTTGGCTTGGAAGTTATTCATACT
CTCCCACTCACCAACTTCATTGTGTTGCTTCAGTTTTGCTACTCACGGTGGGTTCTTTCGAACTTGATCATGATTGACAGAGTTTACTGGATTAATAAGGAAAAACTGAA
TAACTGAAGGAAGATCCTAAACCTAAAAGGAAGATGAAAATTAAGTTCATCTTAGACTGTCAGTTTGTTAAGCCAAATCTTCTTTGTCTAGATTGGATTTATGTATAAGG
GGTAATTATATTGCTTTTAACGAAGGTAACTTCCATAACATAACATAACTATTGAAAGTTTCAGGACACAGAAAATGGTGGTATTTCAGACAGATCGGATGGTGCTGTTG
ATGTCTACCACACATACCACACATGCTTGAACAGAATTTTCTTGAGCAAAAAAATAGTATCCTCCAATGCTATTGATTGAATTAAATTATTATTCTTTCAGAGATTAGAC
AATGCATGCATGTATGTAATTGTTTCACCTTGTTTTTCTATGTAGATGTCTGTTTCCTTTTAAATTTAGTGAATGACAATACTTTTATTAAGCCTGACAATATCACAGGG
ATACTTGCTGTAGCTTACTATAGAATGAGTCATTTTATATGTAGCAGTTGAACATAAAGTTCCTTTACAATAAGAAATGAAAACGGGAAGACTTGTGTGGTCTATGAAAT
CTTCCTTTAGGTGTTAATCGGGATTTTGCCACCTGCTCCTTACAAAAAGAAGTATCATGTCCAAAAATAGACTAAAGTTCCTAGTGTTAGTTGCAAAAAAGTTCTGAAAC
TAGGAAATCCCAGATGAATTGAAATTAGGAACTTTCGGGTACACGAACAACTGATTTTTAAGCGTTTATAGTACGTTTAGAGAAATAAATTGGTTATTGTAGTCTTAGGT
ATATTATAGTTGAACTATAATAGTTTGTACAATTATTTTAGCCTGGTTTTAAAAAACTTAATTGATGTGTAAACTATTTTAATTTTAGAATAAAAAAATCTATTACATAT
TAATATTAATCTCACTTAGTCAAAAAGTTAAATCATAAATATTTTAATTACATCTCCAAATCTTCAGTGAGAAAGGAAAGTCTTTTGATGTGGAGCCTTGAACATCCAAT
TTCCAAAACCACAGTAGAGCTCTAGCAGCTAATTGATGTTAGATCTTTATTATATATCCAATGACACAATCAAAACTTTTGAAATTTAAAGCATAAAGAAAAGGATTTAG
ATACTGTGGTGCTGTGTATGTACAGATTCTTTCTTCCTAAGCTGCAGTTGGTTGATAAATATAAGACAATATTTCACGTGAAAAAACTTTGGAATTGTTTTTTGATGCAG
TGCAGAGAAATCCAGAAGAGTGTGTATGGGAAGGGAACAGAACATCCATTAATGGGCGTTAATTTGGTGTGAAGTCAGGGCAATAAACAATAAATAGGCAGAGCTGATCC
GAGCGGATAAGCTCCTGAAAGAGGTGTGTCCACTGACTTTGAGAGTGCCATCGTCATTAACCATTGTAAGTCATCATCCCTTCTCCATGCCCATGCCTGTACTTACTCTC
TCCTGCTTTACGCCACCATCCCCTCCCCCTCCCCCTCCCCATTCTGTCTTCTTTAACCTGACACTACTCTCTCTTTCACTTTCATTTCTATCACTCCTCACCCTCTTCTT
TTTCTGCCAATGTTCATCGCTACTCCATTTACTATTCACTCACTCC
Protein sequenceShow/hide protein sequence
MSGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTVGSFELDHD