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IVF0012554 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012554
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr03:17404709..17404997
RNA-Seq ExpressionIVF0012554
SyntenyIVF0012554
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035032.1 transposase [Cucumis melo var. makuwa]9.35e-23100Show/hide
Query:  SHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP
        SHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP
Subjt:  SHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP

KAA0035563.1 retrotransposon protein [Cucumis melo var. makuwa]5.08e-2053.47Show/hide
Query:  MQSHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP----------------------------EDVRASRPARTLDGRARSSGSKRKKG
        ++SHP AK LLN  F YYDEL YVF HDRATGRF ETFA+V SNEP                            +DVRASRP+R  +GR RSSGSKRK+G
Subjt:  MQSHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP----------------------------EDVRASRPARTLDGRARSSGSKRKKG

Query:  S
        S
Subjt:  S

KAA0036695.1 retrotransposon protein [Cucumis melo var. makuwa]1.85e-1953.54Show/hide
Query:  QSHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP----------------------------EDVRASRPARTLDGRARSSGSKRKKG
        QSHP AK LLN  F YYDEL YVF  DRATGRF ETFA+V SNEP                            +DVRASRP+R L+GR  SSGSKRK+G
Subjt:  QSHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP----------------------------EDVRASRPARTLDGRARSSGSKRKKG

KAA0067583.1 retrotransposon protein [Cucumis melo var. makuwa]2.90e-1953.47Show/hide
Query:  MQSHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP----------------------------EDVRASRPARTLDGRARSSGSKRKKG
        ++SHP AKELLN  FSYYDEL YVF  DRATGRF ETFA+V SNEP                            +DVRASRP+R  +GR  SSGSKRK+G
Subjt:  MQSHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP----------------------------EDVRASRPARTLDGRARSSGSKRKKG

Query:  S
        S
Subjt:  S

TYK30971.1 retrotransposon protein [Cucumis melo var. makuwa]2.22e-2054.55Show/hide
Query:  SHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP----------------------------EDVRASRPARTLDGRARSSGSKRKKGS
        SHP AK LLN  F YYDEL YVF HDRATGRF ETFA+V SNEP                            +DVRASRP+R  +GR RSSGSKRK+GS
Subjt:  SHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP----------------------------EDVRASRPARTLDGRARSSGSKRKKGS

TrEMBL top hitse value%identityAlignment
A0A5A7SYB2 Retrotransposon protein1.1e-1553.47Show/hide
Query:  MQSHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP----------------------------EDVRASRPARTLDGRARSSGSKRKKG
        ++SHP AK LLN  F YYDEL YVF HDRATGRF ETFA+V SNEP                            +DVRASRP+R  +GR RSSGSKRK+G
Subjt:  MQSHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP----------------------------EDVRASRPARTLDGRARSSGSKRKKG

Query:  S
        S
Subjt:  S

A0A5A7VHM3 Retrotransposon protein3.1e-1553.47Show/hide
Query:  MQSHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP----------------------------EDVRASRPARTLDGRARSSGSKRKKG
        ++SHP AKELLN  FSYYDEL YVF  DRATGRF ETFA+V SNEP                            +DVRASRP+R  +GR  SSGSKRK+G
Subjt:  MQSHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP----------------------------EDVRASRPARTLDGRARSSGSKRKKG

Query:  S
        S
Subjt:  S

A0A5D3BQI7 Retrotransposon protein3.1e-1553.47Show/hide
Query:  MQSHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP----------------------------EDVRASRPARTLDGRARSSGSKRKKG
        ++SHP AK LLN LFSYYDELAYVF  DRATGRF ETFA++ SNEP                            +DVR S+PA T DGR RSS SKRK+G
Subjt:  MQSHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP----------------------------EDVRASRPARTLDGRARSSGSKRKKG

Query:  S
        S
Subjt:  S

A0A5D3BT60 Transposase1.7e-16100Show/hide
Query:  SHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP
        SHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP
Subjt:  SHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP

A0A5D3E5U2 Retrotransposon protein1.8e-1554.55Show/hide
Query:  SHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP----------------------------EDVRASRPARTLDGRARSSGSKRKKGS
        SHP AK LLN  F YYDEL YVF HDRATGRF ETFA+V SNEP                            +DVRASRP+R  +GR RSSGSKRK+GS
Subjt:  SHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEP----------------------------EDVRASRPARTLDGRARSSGSKRKKGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCGCATCCTACAGCGAAGGAACTCCTTAACACACTATTTTCCTATTATGACGAACTTGCATATGTGTTCAGACACGATAGAGCGACCGGTCGCTTCTATGAGAC
ATTCGCCAATGTCGAGTCTAACGAGCCTGAGGATGTACGAGCATCACGACCTGCTCGCACATTAGACGGTAGGGCCAGATCGAGCGGATCGAAGAGAAAGAAGGGAAGTT
AG
mRNA sequenceShow/hide mRNA sequence
ATGCAGTCGCATCCTACAGCGAAGGAACTCCTTAACACACTATTTTCCTATTATGACGAACTTGCATATGTGTTCAGACACGATAGAGCGACCGGTCGCTTCTATGAGAC
ATTCGCCAATGTCGAGTCTAACGAGCCTGAGGATGTACGAGCATCACGACCTGCTCGCACATTAGACGGTAGGGCCAGATCGAGCGGATCGAAGAGAAAGAAGGGAAGTT
AG
Protein sequenceShow/hide protein sequence
MQSHPTAKELLNTLFSYYDELAYVFRHDRATGRFYETFANVESNEPEDVRASRPARTLDGRARSSGSKRKKGS