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IVF0012560 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012560
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Genome locationchr08:15062851..15065762
RNA-Seq ExpressionIVF0012560
SyntenyIVF0012560
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039086.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.43e-4669.63Show/hide
Query:  MANRVHREKENEVGDLPALWQAIAEIGNRLDEHFKQTNRDIQEIQRSITQMNVDLRGARPQNLHEQGGRRGGRQYAGRRHGPMIEEENSSNSENDDNSST
        M NR  REKENE   LPALWQAIA+IGNRLDEHF++TNRDIQEIQRS+ QMN + RGA+PQN   Q  R     Y G RHGP+IEEEN+ NSENDDNSST
Subjt:  MANRVHREKENEVGDLPALWQAIAEIGNRLDEHFKQTNRDIQEIQRSITQMNVDLRGARPQNLHEQGGRRGGRQYAGRRHGPMIEEENSSNSENDDNSST

Query:  ESDEF---SILRANQYERERPQQRTGENSEFKIKI
        ESDEF   +ILRAN YERERPQQR GEN+  K+K+
Subjt:  ESDEF---SILRANQYERERPQQRTGENSEFKIKI

KAA0056127.1 uncharacterized protein E6C27_scaffold697G00040 [Cucumis melo var. makuwa]2.90e-6986.96Show/hide
Query:  MANRVHREKENEVGDLPALWQAIAEIGNRLDEHFKQTNRDIQEIQRSITQMNVDLRGARPQNLHEQ----------GGRRGGRQYAGRRHGPMIEEENSS
        MANR HREKENEVGDLPALWQA AEIGNRLDEHFKQTNRDIQEIQRSITQMNV+LRG RPQNLHEQ          GGRRGGRQYAGRRHGPMIEEENSS
Subjt:  MANRVHREKENEVGDLPALWQAIAEIGNRLDEHFKQTNRDIQEIQRSITQMNVDLRGARPQNLHEQ----------GGRRGGRQYAGRRHGPMIEEENSS

Query:  NSENDDNSSTESDEFS---ILRANQYERERPQQRTGEN
        NSENDDNSSTESDEF+   ILRANQYERERPQQRTGEN
Subjt:  NSENDDNSSTESDEFS---ILRANQYERERPQQRTGEN

PKU77096.1 hypothetical protein MA16_Dca001702 [Dendrobium catenatum]5.00e-0428.67Show/hide
Query:  MANRVHREKENEVGDLPALWQAIAEIGNRLDEHFKQTNRDIQEIQRSITQMNVDLRGARPQNLHEQGGRRGGRQYAGRRHGPMIEEENSSNSENDDNSST
        MA    R        L ALW A   +G R +E   + NR  +EI++ +  + V L      N +    R+G     GR+    ++EE SS+S+ + N   
Subjt:  MANRVHREKENEVGDLPALWQAIAEIGNRLDEHFKQTNRDIQEIQRSITQMNVDLRGARPQNLHEQGGRRGGRQYAGRRHGPMIEEENSSNSENDDNSST

Query:  ESD-EFSILRANQYERERPQQRTGENSEFKIKIGVPYFDSTFETEEFLDW
         S+   S      + R RP++    + EF++K+ +P+FD     E++LDW
Subjt:  ESD-EFSILRANQYERERPQQRTGENSEFKIKIGVPYFDSTFETEEFLDW

XP_020701170.1 uncharacterized protein LOC110113085 [Dendrobium catenatum]6.38e-0529.22Show/hide
Query:  MANRVHREKENEVGDLPALWQAIAEIGNRLDEHFKQTNRDIQEIQRSITQMNVDLRGARPQNLHEQGGRRGGRQYAGRRHGPMIEEENSSNSE-----ND
        MA    R   +    L ALW A   +G R +E     +R  +EI+R + ++ + L    P N +    RRG      R     +EE + S+ E     N 
Subjt:  MANRVHREKENEVGDLPALWQAIAEIGNRLDEHFKQTNRDIQEIQRSITQMNVDLRGARPQNLHEQGGRRGGRQYAGRRHGPMIEEENSSNSE-----ND

Query:  DNSSTESDEFSILRANQYERERPQQRTGENSEFKIKIGVPYFDSTFETEEFLDW
        D+  +E +E        + R RP+     N EF++K+ +PYFD     E++LDW
Subjt:  DNSSTESDEFSILRANQYERERPQQRTGENSEFKIKIGVPYFDSTFETEEFLDW

XP_040994264.1 uncharacterized protein LOC121240799 [Juglans microcarpa x Juglans regia]2.22e-0835.1Show/hide
Query:  MANRVHREKENEVGDLPALWQAIAEIGNRLDEHFKQTNRDIQEIQRSITQMNVDLRGARPQNLHEQGGRRGGRQYAGRRHGPMIEEENSSNSENDDNSST
        MA   + + +NE     ALW++I     +  E F+   R +QEIQRSIT  NV + G R QN    GG RG R        P  ++         DNSS+
Subjt:  MANRVHREKENEVGDLPALWQAIAEIGNRLDEHFKQTNRDIQEIQRSITQMNVDLRGARPQNLHEQGGRRGGRQYAGRRHGPMIEEENSSNSENDDNSST

Query:  ESDEFSILRANQYERERPQQRTGE-NSEFKIKIGVPYFDSTFETEEFLDWL
        E +  +++           QRT + N+ FKIKI +P F+     E FLDWL
Subjt:  ESDEFSILRANQYERERPQQRTGE-NSEFKIKIGVPYFDSTFETEEFLDWL

TrEMBL top hitse value%identityAlignment
A0A2I0WN76 CCHC-type domain-containing protein6.7e-0428.67Show/hide
Query:  MANRVHREKENEVGDLPALWQAIAEIGNRLDEHFKQTNRDIQEIQRSITQMNVDLRGARPQNLHEQGGRRGGRQYAGRRHGPMIEEENSSNSENDDNSST
        MA    R        L ALW A   +G R +E   + NR  +EI++ +  + V L      N +    R+G     GR+    ++EE SS+S+ + N   
Subjt:  MANRVHREKENEVGDLPALWQAIAEIGNRLDEHFKQTNRDIQEIQRSITQMNVDLRGARPQNLHEQGGRRGGRQYAGRRHGPMIEEENSSNSENDDNSST

Query:  ESD-EFSILRANQYERERPQQRTGENSEFKIKIGVPYFDSTFETEEFLDW
         S+   S      + R RP++    + EF++K+ +P+FD     E++LDW
Subjt:  ESD-EFSILRANQYERERPQQRTGENSEFKIKIGVPYFDSTFETEEFLDW

A0A5A7TAL8 Transposon Ty3-G Gag-Pol polyprotein5.4e-3869.85Show/hide
Query:  MANRVHREKENEVGDLPALWQAIAEIGNRLDEHFKQTNRDIQEIQRSITQMNVDLRGARPQNLHEQGGRRGGR-QYAGRRHGPMIEEENSSNSENDDNSS
        M NR  REKENE   LPALWQAIA+IGNRLDEHF++TNRDIQEIQRS+ QMN + RGA+PQN      RRG + +Y G RHGP+IEEEN+ NSENDDNSS
Subjt:  MANRVHREKENEVGDLPALWQAIAEIGNRLDEHFKQTNRDIQEIQRSITQMNVDLRGARPQNLHEQGGRRGGR-QYAGRRHGPMIEEENSSNSENDDNSS

Query:  TESDEF---SILRANQYERERPQQRTGENSEFKIKI
        TESDEF   +ILRAN YERERPQQR GEN+  K+K+
Subjt:  TESDEF---SILRANQYERERPQQRTGENSEFKIKI

A0A5A7UNE4 Uncharacterized protein4.9e-5586.96Show/hide
Query:  MANRVHREKENEVGDLPALWQAIAEIGNRLDEHFKQTNRDIQEIQRSITQMNVDLRGARPQNLHEQ----------GGRRGGRQYAGRRHGPMIEEENSS
        MANR HREKENEVGDLPALWQA AEIGNRLDEHFKQTNRDIQEIQRSITQMNV+LRG RPQNLHEQ          GGRRGGRQYAGRRHGPMIEEENSS
Subjt:  MANRVHREKENEVGDLPALWQAIAEIGNRLDEHFKQTNRDIQEIQRSITQMNVDLRGARPQNLHEQ----------GGRRGGRQYAGRRHGPMIEEENSS

Query:  NSENDDNSSTESDEF---SILRANQYERERPQQRTGEN
        NSENDDNSSTESDEF   +ILRANQYERERPQQRTGEN
Subjt:  NSENDDNSSTESDEF---SILRANQYERERPQQRTGEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAATAGAGTTCATAGAGAGAAGGAGAATGAGGTAGGAGATCTTCCAGCTTTGTGGCAAGCCATAGCAGAAATAGGAAATCGACTCGATGAACATTTCAAGCAGAC
AAATAGGGATATCCAAGAAATCCAGCGAAGCATAACCCAAATGAACGTCGACCTTAGAGGTGCACGACCACAAAATCTTCATGAACAAGGGGGTCGACGTGGGGGTAGAC
AGTATGCTGGACGGCGACATGGACCTATGATAGAAGAAGAAAATAGTAGTAACTCAGAAAATGATGATAATAGCAGCACAGAATCAGACGAGTTCTCAATTCTTAGAGCA
AATCAGTACGAAAGAGAACGCCCCCAACAAAGGACAGGTGAAAACAGTGAGTTTAAAATAAAAATTGGTGTCCCTTATTTCGATAGTACATTTGAAACTGAAGAATTTCT
AGATTGGCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAATAGAGTTCATAGAGAGAAGGAGAATGAGGTAGGAGATCTTCCAGCTTTGTGGCAAGCCATAGCAGAAATAGGAAATCGACTCGATGAACATTTCAAGCAGAC
AAATAGGGATATCCAAGAAATCCAGCGAAGCATAACCCAAATGAACGTCGACCTTAGAGGTGCACGACCACAAAATCTTCATGAACAAGGGGGTCGACGTGGGGGTAGAC
AGTATGCTGGACGGCGACATGGACCTATGATAGAAGAAGAAAATAGTAGTAACTCAGAAAATGATGATAATAGCAGCACAGAATCAGACGAGTTCTCAATTCTTAGAGCA
AATCAGTACGAAAGAGAACGCCCCCAACAAAGGACAGGTGAAAACAGTGAGTTTAAAATAAAAATTGGTGTCCCTTATTTCGATAGTACATTTGAAACTGAAGAATTTCT
AGATTGGCTATAA
Protein sequenceShow/hide protein sequence
MANRVHREKENEVGDLPALWQAIAEIGNRLDEHFKQTNRDIQEIQRSITQMNVDLRGARPQNLHEQGGRRGGRQYAGRRHGPMIEEENSSNSENDDNSSTESDEFSILRA
NQYERERPQQRTGENSEFKIKIGVPYFDSTFETEEFLDWL