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IVF0012563 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012563
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr10:26520606..26521676
RNA-Seq ExpressionIVF0012563
SyntenyIVF0012563
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038417.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]5.73e-8875Show/hide
Query:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDEFLSVSGDCPSCGAEYNRREIAV-ELS-----------REQR
        YYPSTYCEAKRDEFLGLKQGSLSV EYERKYTELSRYADVIVASESDRCR             SGDCPSCGAEYNRRE +V ELS           REQR
Subjt:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDEFLSVSGDCPSCGAEYNRREIAV-ELS-----------REQR

Query:  RFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHRG----------------HFKKDCPQL
        RFTPGINISS QDFKNRSGGQAS N+SYGSVFQRQSQRIPSQ  RST+RSQPGQES+ASTVR+TPCTSCGRNHRG                H KKDCPQL
Subjt:  RFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHRG----------------HFKKDCPQL

Query:  NMTVQRDQGVGS
        NMTVQRDQGVGS
Subjt:  NMTVQRDQGVGS

KAA0040726.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]1.09e-8669.64Show/hide
Query:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE-------------FLSVSGDCPSCGAEYNRREIAVELSR--
        YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVI+ASESDRCRRFERGL  E             F  +              + AVELSR  
Subjt:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE-------------FLSVSGDCPSCGAEYNRREIAVELSR--

Query:  ---------EQRRFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHRG-------------
                 EQRRFTPGINISS QDFKNRSGGQAS N+SYGSVFQRQSQRIPSQ IRST+RSQPGQESIASTVRR PCTSCGRNHRG             
Subjt:  ---------EQRRFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHRG-------------

Query:  ---HFKKDCPQLNMTVQRDQGVGS
           HFKKDCPQLNMTVQRDQGVGS
Subjt:  ---HFKKDCPQLNMTVQRDQGVGS

KAA0045364.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]1.35e-8769.2Show/hide
Query:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE-------------FLSVSGDCPSCGAEYNRREIAVELSR--
        YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYA+VI+ASESDRCRRFERGL  E             F  +              + AVELSR  
Subjt:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE-------------FLSVSGDCPSCGAEYNRREIAVELSR--

Query:  ---------EQRRFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHRG-------------
                 EQRRFTPGINISS QDFKNRSGGQAS N+SYGSVFQRQSQRIPSQ IRST+RSQPGQESIASTVRR PCTSCGRNHRG             
Subjt:  ---------EQRRFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHRG-------------

Query:  ---HFKKDCPQLNMTVQRDQGVGS
           HFKKDCPQLNMTVQRDQGVGS
Subjt:  ---HFKKDCPQLNMTVQRDQGVGS

KAA0050492.1 uncharacterized protein E6C27_scaffold175G001240 [Cucumis melo var. makuwa]1.06e-8768.75Show/hide
Query:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE-------------FLSVSGDCPSCGAEYNRREIAVELSR--
        YYPSTYCEAKRDEFLGLKQGSLSV EYERKYTELSRYADVI+ASESDRCRRFERGL  E             F  +              + AVELSR  
Subjt:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE-------------FLSVSGDCPSCGAEYNRREIAVELSR--

Query:  ---------EQRRFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHRG-------------
                 EQRRFTPGINISS QDFKNRSGGQAS N+SYGSVFQRQSQRIPSQ IRST+RSQPGQESIASTVRR PCTSCGRNHRG             
Subjt:  ---------EQRRFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHRG-------------

Query:  ---HFKKDCPQLNMTVQRDQGVGS
           HFKKDC QLNMTVQRDQGVGS
Subjt:  ---HFKKDCPQLNMTVQRDQGVGS

TYK03606.1 uncharacterized protein E5676_scaffold1369G00240 [Cucumis melo var. makuwa]2.62e-8769.2Show/hide
Query:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE-------------FLSVSGDCPSCGAEYNRREIAVELSR--
        YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVI+ASESDRCRRFERGL  E             F  +              + AVELSR  
Subjt:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE-------------FLSVSGDCPSCGAEYNRREIAVELSR--

Query:  ---------EQRRFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHRG-------------
                 EQRRFTPGINISS QDFKNRSGGQAS N+SYGSVFQRQSQRIPSQ IRST+RSQPGQESIASTVRR PCTSCGRNHRG             
Subjt:  ---------EQRRFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHRG-------------

Query:  ---HFKKDCPQLNMTVQRDQGVGS
           HFKKDC QLNMTVQRDQGVGS
Subjt:  ---HFKKDCPQLNMTVQRDQGVGS

TrEMBL top hitse value%identityAlignment
A0A5A7TA17 Putative gag-pol polyprotein2.4e-7575Show/hide
Query:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDEFLSVSGDCPSCGAEYNRREIAV-ELS-----------REQR
        YYPSTYCEAKRDEFLGLKQGSLSV EYERKYTELSRYADVIVASESDRCR             SGDCPSCGAEYNRRE +V ELS           REQR
Subjt:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDEFLSVSGDCPSCGAEYNRREIAV-ELS-----------REQR

Query:  RFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHR----------------GHFKKDCPQL
        RFTPGINISS QDFKNRSGGQAS N+SYGSVFQRQSQRIPSQ  RST+RSQPGQES+ASTVR+TPCTSCGRNHR                GH KKDCPQL
Subjt:  RFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHR----------------GHFKKDCPQL

Query:  NMTVQRDQGVGS
        NMTVQRDQGVGS
Subjt:  NMTVQRDQGVGS

A0A5A7TW42 Reverse transcriptase1.9e-7286.13Show/hide
Query:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDEFLSVSGDCPSCGAEYNRREIAVELS-----------REQRR
        YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCR             SGDCPSCGAEYNRREIAVELS           REQRR
Subjt:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDEFLSVSGDCPSCGAEYNRREIAVELS-----------REQRR

Query:  FTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHR
        FTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHR
Subjt:  FTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHR

A0A5A7U2V7 Reverse transcriptase9.6e-7269.64Show/hide
Query:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE-------------FLSVSGDCPSCGAEYNRREIAVELS---
        YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVI+ASESDRCRRFERGL  E             F  +              + AVELS   
Subjt:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE-------------FLSVSGDCPSCGAEYNRREIAVELS---

Query:  --------REQRRFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHR--------------
                REQRRFTPGINISS QDFKNRSGGQAS N+SYGSVFQRQSQRIPSQ IRST+RSQPGQESIASTVRR PCTSCGRNHR              
Subjt:  --------REQRRFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHR--------------

Query:  --GHFKKDCPQLNMTVQRDQGVGS
          GHFKKDCPQLNMTVQRDQGVGS
Subjt:  --GHFKKDCPQLNMTVQRDQGVGS

A0A5D3BHI1 Reverse transcriptase9.6e-7269.64Show/hide
Query:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE-------------FLSVSGDCPSCGAEYNRREIAVELS---
        YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVI+ASESDRCRRFERGL  E             F  +              + AVELS   
Subjt:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE-------------FLSVSGDCPSCGAEYNRREIAVELS---

Query:  --------REQRRFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHR--------------
                REQRRFTPGINISS QDFKNRSGGQAS N+SYGSVFQRQSQRIPSQ IRST+RSQPGQESIASTVRR PCTSCGRNHR              
Subjt:  --------REQRRFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHR--------------

Query:  --GHFKKDCPQLNMTVQRDQGVGS
          GHFKKDCPQLNMTVQRDQGVGS
Subjt:  --GHFKKDCPQLNMTVQRDQGVGS

A0A5D3BS67 Reverse transcriptase9.6e-7269.64Show/hide
Query:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE-------------FLSVSGDCPSCGAEYNRREIAVELS---
        YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVI+ASESDRCRRFERGL  E             F  +              + AVELS   
Subjt:  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE-------------FLSVSGDCPSCGAEYNRREIAVELS---

Query:  --------REQRRFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHR--------------
                REQRRFTPGINISS QDFKNRSGGQAS N+SYGSVFQRQSQRIPSQ IRST+RSQPGQESIASTVRR PCTSCGRNHR              
Subjt:  --------REQRRFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHR--------------

Query:  --GHFKKDCPQLNMTVQRDQGVGS
          GHFKKDCPQLNMTVQRDQGVGS
Subjt:  --GHFKKDCPQLNMTVQRDQGVGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGGTCCTACCCAAGGTCCATCTTATTATCCCAGCACATACTGCGAAGCCAAGAGGGATGAATTTCTGGGGTTGAAACAAGGATCACTTTCAGTGGCTGAGTATGA
GAGGAAGTATACCGAGCTTTCACGGTATGCTGACGTTATTGTAGCTTCTGAGAGTGACAGGTGCCGAAGGTTTGAAAGAGGGTTGCTGGACGAATTTCTCTCAGTTAGTG
GAGACTGCCCTTCGTGTGGAGCAGAGTATAACAGAAGAGAAATCGCAGTGGAGCTTAGCCGTGAGCAGCGGAGGTTCACGCCTGGGATAAATATTTCAAGCCATCAAGAT
TTTAAGAATCGCTCTGGAGGCCAAGCATCGAGTAACATGAGTTATGGTAGTGTTTTTCAGAGACAGAGCCAGAGAATACCTAGTCAACACATTAGATCAACAATAAGATC
GCAACCAGGTCAGGAGTCCATTGCTAGTACCGTCAGGCGAACACCATGCACGAGTTGTGGCAGGAACCATCGGGGACATTTCAAGAAAGATTGTCCGCAGTTGAACATGA
CAGTTCAGAGAGATCAGGGAGTTGGGTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGGTCCTACCCAAGGTCCATCTTATTATCCCAGCACATACTGCGAAGCCAAGAGGGATGAATTTCTGGGGTTGAAACAAGGATCACTTTCAGTGGCTGAGTATGA
GAGGAAGTATACCGAGCTTTCACGGTATGCTGACGTTATTGTAGCTTCTGAGAGTGACAGGTGCCGAAGGTTTGAAAGAGGGTTGCTGGACGAATTTCTCTCAGTTAGTG
GAGACTGCCCTTCGTGTGGAGCAGAGTATAACAGAAGAGAAATCGCAGTGGAGCTTAGCCGTGAGCAGCGGAGGTTCACGCCTGGGATAAATATTTCAAGCCATCAAGAT
TTTAAGAATCGCTCTGGAGGCCAAGCATCGAGTAACATGAGTTATGGTAGTGTTTTTCAGAGACAGAGCCAGAGAATACCTAGTCAACACATTAGATCAACAATAAGATC
GCAACCAGGTCAGGAGTCCATTGCTAGTACCGTCAGGCGAACACCATGCACGAGTTGTGGCAGGAACCATCGGGGACATTTCAAGAAAGATTGTCCGCAGTTGAACATGA
CAGTTCAGAGAGATCAGGGAGTTGGGTCCTAG
Protein sequenceShow/hide protein sequence
MQGPTQGPSYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDEFLSVSGDCPSCGAEYNRREIAVELSREQRRFTPGINISSHQD
FKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHRGHFKKDCPQLNMTVQRDQGVGS