CuGenDBv2

Gene ID	IVF0012575
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PMD domain-containing protein
Genome location	chr04:18500177..18500554
RNA-Seq Expression	IVF0012575
Synteny	IVF0012575
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0046821.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.38e-77

93.6

Show/hide

Query:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW
        MVYFTERFLSGVRHL+I SDRNQPREDGLSLIVEKSWAGAFADHWP LDNNSVLPRLS+E+PLSEGKSAWVLQSSIHNEAPNSGRALTLGQ LIEGQTRW
Subjt:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW

Query:  GTVTKVPGEFCFTDYYWEWLELVVG
        GT+TKVPGEFCFTD YWEWLELVVG
Subjt:  GTVTKVPGEFCFTDYYWEWLELVVG

KAA0048380.1 putative mitochondrial protein [Cucumis melo var. makuwa]

7.98e-82

93.6

Show/hide

Query:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW
        MVYFTERFLS VRHLVI SDRNQPREDGLSLIVE  WAGAFADHWPRLDNNSVLPRLS+E+PLSEGKSAWVLQSSIHNEAPNSGRALTLGQ LIEGQTRW
Subjt:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW

Query:  GTVTKVPGEFCFTDYYWEWLELVVG
        GTVTKVPGEFCFTD YWEWLELVVG
Subjt:  GTVTKVPGEFCFTDYYWEWLELVVG

KAA0053734.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.48e-80

94.4

Show/hide

Query:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW
        MVYFTERFLSGVRHLVI SDRNQPREDGLSLIVEK WAGAFADHWPRLDNNSVLPRLS+E+PLSEGKSAW+LQSSIHNEAPNSGRALTLGQ LIEGQTRW
Subjt:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW

Query:  GTVTKVPGEFCFTDYYWEWLELVVG
        GTVTKVPGEFCFTD YWEWLELVVG
Subjt:  GTVTKVPGEFCFTDYYWEWLELVVG

KAA0057574.1 putative mitochondrial protein [Cucumis melo var. makuwa]

4.61e-83

94.4

Show/hide

Query:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW
        MVYFTERFLSGVRHLVI SDRNQPREDGLSLIVEK WAGAFADHWPRLDNNSVLPRLS+EVPLSEGKSAWVLQSSIHNEA NSG+ALTLGQ LIEGQTRW
Subjt:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW

Query:  GTVTKVPGEFCFTDYYWEWLELVVG
        GTVTKVPGEFCFTD YWEWLELVVG
Subjt:  GTVTKVPGEFCFTDYYWEWLELVVG

TYK04516.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.38e-77

93.6

Show/hide

Query:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW
        MVYFTERFLSGVRHL+I SDRNQPREDGLSLIVEKSWAGAFADHWP LDNNSVLPRLS+E+PLSEGKSAWVLQSSIHNEAPNSGRALTLGQ LIEGQTRW
Subjt:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW

Query:  GTVTKVPGEFCFTDYYWEWLELVVG
        GT+TKVPGEFCFTD YWEWLELVVG
Subjt:  GTVTKVPGEFCFTDYYWEWLELVVG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TFC8 PMD domain-containing protein

5.6e-65

Show/hide

Query:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW
        MVYFTERFLSGVRHLVI SDRNQPREDGLSLIVEK WAGAFADHWPRLDNNSVLPRLS+EVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQ LIEGQTRW
Subjt:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW

Query:  GTVTKVPGEFCFTDYYWEWLELVVG
        GTVTKVPGEFCFTD YWEWLELVVG
Subjt:  GTVTKVPGEFCFTDYYWEWLELVVG

A0A5A7TX42 Uncharacterized protein

4.3e-65

Show/hide

Query:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW
        MVYFTERFLSGVRHLVI SDRNQPREDGLSLIVEK WAGAFADHWPRLDNNSVLPRLS+EVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQ LIEGQTRW
Subjt:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW

Query:  GTVTKVPGEFCFTDYYWEWLELVVG
        GTVTKVPGEFCFTD YWEWLELVVG
Subjt:  GTVTKVPGEFCFTDYYWEWLELVVG

A0A5A7TZN9 Putative mitochondrial protein

1.6e-64

93.6

Show/hide

Query:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW
        MVYFTERFLSGVRHL+I SDRNQPREDGLSLIVEKSWAGAFADHWP LDNNSVLPRLS+E+PLSEGKSAWVLQSSIHNEAPNSGRALTLGQ LIEGQTRW
Subjt:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW

Query:  GTVTKVPGEFCFTDYYWEWLELVVG
        GT+TKVPGEFCFTD YWEWLELVVG
Subjt:  GTVTKVPGEFCFTDYYWEWLELVVG

A0A5A7UET3 Putative mitochondrial protein

7.4e-65

94.4

Show/hide

Query:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW
        MVYFTERFLSGVRHLVI SDRNQPREDGLSLIVEK WAGAFADHWPRLDNNSVLPRLS+E+PLSEGKSAW+LQSSIHNEAPNSGRALTLGQ LIEGQTRW
Subjt:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW

Query:  GTVTKVPGEFCFTDYYWEWLELVVG
        GTVTKVPGEFCFTD YWEWLELVVG
Subjt:  GTVTKVPGEFCFTDYYWEWLELVVG

A0A5D3D7V4 PMD domain-containing protein

5.6e-65

Show/hide

Query:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW
        MVYFTERFLSGVRHLVI SDRNQPREDGLSLIVEK WAGAFADHWPRLDNNSVLPRLS+EVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQ LIEGQTRW
Subjt:  MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRW

Query:  GTVTKVPGEFCFTDYYWEWLELVVG
        GTVTKVPGEFCFTD YWEWLELVVG
Subjt:  GTVTKVPGEFCFTDYYWEWLELVVG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTTTACTTCACGGAACGATTCTTGTCTGGAGTTCGACATCTCGTAATATTTTCTGATAGAAATCAACCCAGAGAAGATGGACTTAGTCTCATTGTGGAGAAGTCGTG
GGCTGGCGCTTTTGCAGATCATTGGCCACGCTTAGACAACAACTCAGTTCTTCCCAGATTATCCATGGAGGTACCCTTGTCCGAGGGAAAAAGCGCATGGGTCTTGCAAT
CTTCTATCCACAATGAGGCTCCTAATTCTGGCAGAGCTCTCACTCTTGGGCAACATTTAATTGAAGGCCAAACACGTTGGGGTACTGTGACCAAGGTCCCTGGAGAGTTT
TGCTTTACTGACTATTATTGGGAGTGGTTGGAGCTTGTAGTTGGTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVYFTERFLSGVRHLVIFSDRNQPREDGLSLIVEKSWAGAFADHWPRLDNNSVLPRLSMEVPLSEGKSAWVLQSSIHNEAPNSGRALTLGQHLIEGQTRWGTVTKVPGEF
CFTDYYWEWLELVVG

IVF0012575 (gene) of Melon (IVF77) v1 genome