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IVF0012580 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012580
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:14507168..14507395
RNA-Seq ExpressionIVF0012580
SyntenyIVF0012580
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040613.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.18e-1258.62Show/hide
Query:  GYCRHSVRLHGQHVGIGKLPTFGSDIANRLLSMSSSMSTYINHRHGVGRPFEDVASTE
        GYCR ++  HGQHV  G+LP   +DIANRLLS SS  S Y+NHR  + RP  DVAS E
Subjt:  GYCRHSVRLHGQHVGIGKLPTFGSDIANRLLSMSSSMSTYINHRHGVGRPFEDVASTE
KAA0052854.1 transcription factor bHLH35 [Cucumis melo var. makuwa]4.86e-0855.17Show/hide
Query:  IGKLPTFGSDIANRLLSMSSSMSTYINHRHGVGRPFEDVASTELLTKSRRQNDQLRHI
        IG+L T GSD+ NRLL MS SMSTY+NHR G+ RP E            RQND LR I
Subjt:  IGKLPTFGSDIANRLLSMSSSMSTYINHRHGVGRPFEDVASTELLTKSRRQNDQLRHI
TrEMBL top hitse value%identityAlignment
A0A5A7TC06 Retrovirus-related Pol polyprotein from transposon TNT 1-944.1e-1058.62Show/hide
Query:  GYCRHSVRLHGQHVGIGKLPTFGSDIANRLLSMSSSMSTYINHRHGVGRPFEDVASTE
        GYCR ++  HGQHV  G+LP   +DIANRLLS SS  S Y+NHR  + RP  DVAS E
Subjt:  GYCRHSVRLHGQHVGIGKLPTFGSDIANRLLSMSSSMSTYINHRHGVGRPFEDVASTE
A0A5A7UC12 Transcription factor bHLH351.0e-0555.17Show/hide
Query:  IGKLPTFGSDIANRLLSMSSSMSTYINHRHGVGRPFEDVASTELLTKSRRQNDQLRHI
        IG+L T GSD+ NRLL MS SMSTY+NHR G+ RP E            RQND LR I
Subjt:  IGKLPTFGSDIANRLLSMSSSMSTYINHRHGVGRPFEDVASTELLTKSRRQNDQLRHI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTACTGTCGACACAGTGTTCGCTTACATGGTCAACACGTCGGCATTGGAAAACTGCCGACGTTTGGTAGCGACATAGCAAATAGGTTACTATCAATGTCATCAAG
TATGTCGACATACATCAACCACCGACACGGTGTCGGCAGACCTTTTGAAGACGTCGCGTCGACAGAACTTTTGACGAAGTCGCGTCGTCAGAACGACCAATTGCGACACA
TAATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTACTGTCGACACAGTGTTCGCTTACATGGTCAACACGTCGGCATTGGAAAACTGCCGACGTTTGGTAGCGACATAGCAAATAGGTTACTATCAATGTCATCAAG
TATGTCGACATACATCAACCACCGACACGGTGTCGGCAGACCTTTTGAAGACGTCGCGTCGACAGAACTTTTGACGAAGTCGCGTCGTCAGAACGACCAATTGCGACACA
TAATATGA
Protein sequenceShow/hide protein sequence
MGYCRHSVRLHGQHVGIGKLPTFGSDIANRLLSMSSSMSTYINHRHGVGRPFEDVASTELLTKSRRQNDQLRHII