; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0012593 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012593
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr10:10093801..10094487
RNA-Seq ExpressionIVF0012593
SyntenyIVF0012593
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034826.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]3.29e-13990.71Show/hide
Query:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET
        MVF +LRDNQLY N KKCVFAHSKIQYLGH ISK GVEADE+KI+SMV+WPRPSDV+ELRGFLGLTGYYRRFV+GYS+IAT LTKLLQKNAFKW EEA+T
Subjt:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET

Query:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE
        AFVKLKVAMTTIPVLALPDW LPFTIETDASGSGLGAVLSQRGHPIAF+SQKLSQRAQTKSIYERELM VVLSVQ+WRHYLLGRKF+I+SDQKALKFLLE
Subjt:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQP
        QREVQPQFQKWLTKLLGYDFEILYQP
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQP

KAA0048168.1 uncharacterized protein E6C27_scaffold63G00690 [Cucumis melo var. makuwa]1.63e-14391.19Show/hide
Query:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET
        MVFA+LRDNQLYAN KKCVFAHS+IQYLGH ISK GVEADE+KI+SMV+WPRPSDV ELRGFLGLTGYYRRFVKGYS+IATPLTKLLQKNAFKW EEAET
Subjt:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET

Query:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE
        AFV+LKVAMTTIPVLALPDW+LPFTIETDASGSGLGAVLSQRGHPIAF+SQKLSQRAQ KSIYERELM V+LSVQ+WRHYLLGRKF+I+SDQKALKFLLE
Subjt:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPG
        QREVQPQFQKWLTKLLGYDFEILYQPG
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPG

KAA0063770.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]8.49e-14085.46Show/hide
Query:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET
        MVFA+LRDNQLYAN+KKCVFAHS+IQYLGH ISK+GV+ADE+KI+SM+SWPRPSDVS LRGFLGLTGYY +FV+GY +IA PLTKLLQKNAFKW+ EAE 
Subjt:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET

Query:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE
        AF  LK  MTT+PVLALPDW LPFTIETDASGSGLGAVLSQ  HPIAFFSQKLSQRAQ KSI ERELM VVLS+QKWRHYLLGRKF I+SDQKALKFLLE
Subjt:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPG
        QREVQPQFQKWLTKLLGYDFEILYQPG
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPG

TYK14439.1 uncharacterized protein E5676_scaffold186G00980 [Cucumis melo var. makuwa]5.21e-151100Show/hide
Query:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET
        MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET
Subjt:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET

Query:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE
        AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE
Subjt:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPG
        QREVQPQFQKWLTKLLGYDFEILYQPG
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPG

TYK14624.1 uncharacterized protein E5676_scaffold1275G00160 [Cucumis melo var. makuwa]3.78e-14189.43Show/hide
Query:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET
        M+FA+LRDNQLYAN KKCVFAHS+IQYLGH ISK GVEAD++KI+SMV+WPRPSDV+ELRGFLGLTGYYRRFVKGYS+I TPLTKLLQKNAFKW EEAET
Subjt:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET

Query:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE
         FVKLKVAMTTIPVLALPDW+LPFTIETDASGSGLGAVLSQRGHPIAF+S+KLSQRAQ KSIYERELM VVLSVQ+W+HYLLGRKF+I+SDQKALKFLLE
Subjt:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPG
        QREVQPQFQKWLTKLLGYDFEILYQPG
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPG

TrEMBL top hitse value%identityAlignment
A0A5A7T8C0 Ty3/gypsy retrotransposon protein1.1e-11490.75Show/hide
Query:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET
        MVFA+LRDN LYAN KKCVFAHS+IQYLGH ISK GVEADE+KI+SMV WPRPSDV+ELRGFLGLTGYYRRFVKGYS+IATPLTKLLQKNAFKW EEAET
Subjt:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET

Query:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE
        AFV+LKVAMTTIPVL LPDW LPFTIETDASGSGLGAVLSQRGHPIAF+SQKLSQ+AQ KSIYERELMVVVLSVQ+WRHYLLGRKF+I+SDQKALKFLLE
Subjt:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPG
        QREVQPQFQKWLTKLLGYDFEILYQPG
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPG

A0A5A7TYW6 Reverse transcriptase domain-containing protein3.7e-11591.19Show/hide
Query:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET
        MVFA+LRDNQLYAN KKCVFAHS+IQYLGH ISK GVEADE+KI+SMV+WPRPSDV ELRGFLGLTGYYRRFVKGYS+IATPLTKLLQKNAFKW EEAET
Subjt:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET

Query:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE
        AFV+LKVAMTTIPVLALPDW+LPFTIETDASGSGLGAVLSQRGHPIAF+SQKLSQRAQ KSIYERELM V+LSVQ+WRHYLLGRKF+I+SDQKALKFLLE
Subjt:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPG
        QREVQPQFQKWLTKLLGYDFEILYQPG
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPG

A0A5A7UYM1 Ty3/gypsy retrotransposon protein7.5e-11691.63Show/hide
Query:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET
        MVFA+LRDNQLYAN KKCVFAHSKIQYLGH ISK GVEADE+KI+SMV+WPRPSDV+ELRGFLGLTGYYRRFVKGYS+IATPLTKLLQKNAFKW E+AET
Subjt:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET

Query:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE
        AFV+LKVAMTTIPVLALPDW+LPFTIETDASGSGLGAVLSQRGHPIAF+SQKLSQRAQ KSIYERELM VVLSVQ+WRHYLLGRKF+I+SDQKALKFLLE
Subjt:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPG
        QREVQPQFQKWLTKLLGYDFEILYQPG
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPG

A0A5D3BVL1 Ty3/gypsy retrotransposon protein1.4e-11491.19Show/hide
Query:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET
        MVFA+LRDNQLYAN KKCVFAHSKIQYLGH ISK GVEADE+KI+SMV+WPRPSDV ELRGFLGLTGYYRRFV+GY++IATPLTKLLQKNAFKW EEAET
Subjt:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET

Query:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE
        AFVKLKVAMTTIPVLALPDW LPFT ETDASGSGLGAVL QRGHPIAF+SQKLSQRAQTKSIYERELM VVLSVQ+WRHYLLGRKF+I+SDQKALKFLLE
Subjt:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPG
        QREVQPQFQKWLTKLLGYDFEILYQPG
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPG

A0A5D3CW02 Uncharacterized protein1.5e-124100Show/hide
Query:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET
        MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET
Subjt:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAET

Query:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE
        AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE
Subjt:  AFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLE

Query:  QREVQPQFQKWLTKLLGYDFEILYQPG
        QREVQPQFQKWLTKLLGYDFEILYQPG
Subjt:  QREVQPQFQKWLTKLLGYDFEILYQPG

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.69.6e-4439.74Show/hide
Query:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKN--AFKWEEEA
        +VF  L    L     KC F   +  +LGH ++  G++ + EKI+++  +P P+   E++ FLGLTGYYR+F+  ++DIA P+TK L+KN        E 
Subjt:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKN--AFKWEEEA

Query:  ETAFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFL
        ++AF KLK  ++  P+L +PD+T  FT+ TDAS   LGAVLSQ GHP+++ S+ L++     S  E+EL+ +V + + +RHYLLGR F I SD + L +L
Subjt:  ETAFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFL

Query:  LEQREVQPQFQKWLTKLLGYDFEILYQPG
           ++   +  +W  KL  +DF+I Y  G
Subjt:  LEQREVQPQFQKWLTKLLGYDFEILYQPG

P10401 Retrovirus-related Pol polyprotein from transposon gypsy1.2e-3333.75Show/hide
Query:  VFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLL------------QK
        V   L D  +  +Q+K  F    ++YLG  +SK G ++D EK+K++  +P P  V ++R FLGL  YYR F+K ++ IA P+T +L            +K
Subjt:  VFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLL------------QK

Query:  NAFKWEEEAETAFVKLK-VAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLG-RKFA
           ++ E    AF +L+ +  +   +L  PD+  PF + TDAS SG+GAVLSQ G PI   S+ L Q  Q  +  EREL+ +V ++ K +++L G R+  
Subjt:  NAFKWEEEAETAFVKLK-VAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLG-RKFA

Query:  IMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPG
        I +D + L F +  R    + ++W + +  ++ ++ Y+PG
Subjt:  IMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPG

P20825 Retrovirus-related Pol polyprotein from transposon 2977.4e-4441.05Show/hide
Query:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAE-
        +VF  L D  L     KC F   +  +LGH ++  G++ +  K+K++VS+P P+   E+R FLGLTGYYR+F+  Y+DIA P+T  L+K      ++ E 
Subjt:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAE-

Query:  -TAFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFL
          AF KLK  +   P+L LPD+   F + TDAS   LGAVLSQ GHPI+F S+ L+      S  E+EL+ +V + + +RHYLLGR+F I SD + L++L
Subjt:  -TAFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFL

Query:  LEQREVQPQFQKWLTKLLGYDFEILYQPG
           +E   + ++W  +L  Y F+I Y  G
Subjt:  LEQREVQPQFQKWLTKLLGYDFEILYQPG

P92523 Uncharacterized mitochondrial protein AtMg008602.2e-3558.73Show/hide
Query:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHH--ISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEA
        MV  +   +Q YAN+KKC F   +I YLGH   IS +GV AD  K+++MV WP P + +ELRGFLGLTGYYRRFVK Y  I  PLT+LL+KN+ KW E A
Subjt:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHH--ISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEA

Query:  ETAFVKLKVAMTTIPVLALPDWTLPF
          AF  LK A+TT+PVLALPD  LPF
Subjt:  ETAFVKLKVAMTTIPVLALPDWTLPF

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus7.6e-3331.97Show/hide
Query:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQ------------
        +V A L    L  N +K  F  +++++LG+ ++  G++AD +K++++   P P+ V EL+ FLG+T YYR+F++ Y+ +A PLT L +            
Subjt:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQ------------

Query:  KNAFKWEEEAETAFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQ----RGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGR
        K     +E A  +F  LK  + +  +LA P +T PF + TDAS   +GAVLSQ    R  PIA+ S+ L++  +  +  E+E++ ++ S+   R YL G 
Subjt:  KNAFKWEEEAETAFVKLKVAMTTIPVLALPDWTLPFTIETDASGSGLGAVLSQ----RGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGR

Query:  -KFAIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPG
            + +D + L F L  R    + ++W  ++  Y+ E++Y+PG
Subjt:  -KFAIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPG

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.5e-3658.73Show/hide
Query:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHH--ISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEA
        MV  +   +Q YAN+KKC F   +I YLGH   IS +GV AD  K+++MV WP P + +ELRGFLGLTGYYRRFVK Y  I  PLT+LL+KN+ KW E A
Subjt:  MVFALLRDNQLYANQKKCVFAHSKIQYLGHH--ISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEA

Query:  ETAFVKLKVAMTTIPVLALPDWTLPF
          AF  LK A+TT+PVLALPD  LPF
Subjt:  ETAFVKLKVAMTTIPVLALPDWTLPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTCGCTCTGCTGAGGGATAACCAACTCTACGCAAATCAGAAGAAATGTGTCTTTGCCCACTCTAAAATTCAATACTTGGGGCACCATATATCAAAGAAAGGAGT
GGAAGCAGATGAAGAAAAGATTAAAAGCATGGTCAGTTGGCCGAGACCTTCAGATGTATCGGAATTAAGAGGGTTCTTGGGGTTGACAGGCTATTACCGAAGGTTTGTTA
AAGGTTACAGTGACATTGCGACGCCCCTCACTAAACTCTTACAGAAGAATGCATTTAAATGGGAAGAAGAAGCCGAAACAGCATTCGTGAAACTAAAGGTAGCAATGACC
ACTATACCCGTATTAGCATTACCGGATTGGACTCTACCCTTCACCATAGAAACAGATGCATCAGGCAGCGGATTGGGAGCGGTGTTATCTCAAAGAGGACATCCCATAGC
TTTCTTTAGTCAGAAATTGTCGCAGAGAGCTCAAACGAAATCCATTTATGAAAGAGAATTGATGGTTGTGGTGCTATCAGTACAAAAGTGGCGTCACTACTTGTTGGGAA
GGAAATTCGCCATCATGTCTGACCAGAAGGCTTTGAAATTTTTGCTAGAACAAAGAGAAGTACAGCCACAATTCCAGAAATGGTTAACCAAGCTCCTCGGGTACGACTTC
GAAATCCTTTATCAACCGGGTTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTCGCTCTGCTGAGGGATAACCAACTCTACGCAAATCAGAAGAAATGTGTCTTTGCCCACTCTAAAATTCAATACTTGGGGCACCATATATCAAAGAAAGGAGT
GGAAGCAGATGAAGAAAAGATTAAAAGCATGGTCAGTTGGCCGAGACCTTCAGATGTATCGGAATTAAGAGGGTTCTTGGGGTTGACAGGCTATTACCGAAGGTTTGTTA
AAGGTTACAGTGACATTGCGACGCCCCTCACTAAACTCTTACAGAAGAATGCATTTAAATGGGAAGAAGAAGCCGAAACAGCATTCGTGAAACTAAAGGTAGCAATGACC
ACTATACCCGTATTAGCATTACCGGATTGGACTCTACCCTTCACCATAGAAACAGATGCATCAGGCAGCGGATTGGGAGCGGTGTTATCTCAAAGAGGACATCCCATAGC
TTTCTTTAGTCAGAAATTGTCGCAGAGAGCTCAAACGAAATCCATTTATGAAAGAGAATTGATGGTTGTGGTGCTATCAGTACAAAAGTGGCGTCACTACTTGTTGGGAA
GGAAATTCGCCATCATGTCTGACCAGAAGGCTTTGAAATTTTTGCTAGAACAAAGAGAAGTACAGCCACAATTCCAGAAATGGTTAACCAAGCTCCTCGGGTACGACTTC
GAAATCCTTTATCAACCGGGTTGTTAA
Protein sequenceShow/hide protein sequence
MVFALLRDNQLYANQKKCVFAHSKIQYLGHHISKKGVEADEEKIKSMVSWPRPSDVSELRGFLGLTGYYRRFVKGYSDIATPLTKLLQKNAFKWEEEAETAFVKLKVAMT
TIPVLALPDWTLPFTIETDASGSGLGAVLSQRGHPIAFFSQKLSQRAQTKSIYERELMVVVLSVQKWRHYLLGRKFAIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDF
EILYQPGC