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IVF0012640 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012640
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationchr06:6212479..6213015
RNA-Seq ExpressionIVF0012640
SyntenyIVF0012640
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047357.1 uncharacterized protein E6C27_scaffold754G00030 [Cucumis melo var. makuwa]4.17e-10698.77Show/hide
Query:  MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEWER
        MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEWER
Subjt:  MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEWER

Query:  KIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKRYVL
        KIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKR  L
Subjt:  KIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKRYVL

KAA0051908.1 putative gag protein [Cucumis melo var. makuwa]1.48e-7768.89Show/hide
Query:  AILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNL---MQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEW
        AILQAIQGM++ +R++RQERRAQQQRE R  QEDE + DL   ERQ+GGR N+RG+GRNNL   MQPRR+ER  EDR  G+KLKIPPF+GT ++ETYL+W
Subjt:  AILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNL---MQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEW

Query:  ERKIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKRYVLKHHEQELKTKLQALK
        ERKIEHVFDCNTFS NKKMKL   EFT++A  WY +LKS++RRKEEDPI+TW+E K+AMRKR+V KH+E++LKTKLQ+L+
Subjt:  ERKIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKRYVLKHHEQELKTKLQALK

KAA0057113.1 putative gag protein [Cucumis melo var. makuwa]2.17e-7567.78Show/hide
Query:  AILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNL---MQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEW
        AILQAIQGM++ +R++RQERRAQQQRE R LQEDE + DL   ERQ+ GR N+RG+GRNNL   M+PRR+ER  EDR  G+KLKIPPF+GTA++ETYL+W
Subjt:  AILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNL---MQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEW

Query:  ERKIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKRYVLKHHEQELKTKLQALK
        ERKIEHVFDCNTFS+N+KMKL   EFT++A  WY +LKS++RRKEED I+TW+E K+AMRKR+V KH+E++LKTKLQ+L+
Subjt:  ERKIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKRYVLKHHEQELKTKLQALK

TYJ98383.1 uncharacterized protein E5676_scaffold232G001260 [Cucumis melo var. makuwa]2.57e-7267.22Show/hide
Query:  AILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNL---MQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEW
        AILQAIQGM++ +R++RQERRA  +RE R  QEDE + DL   ERQ GGR N+RG+GRNNL   MQPRR+ER  EDR  G+KLKIP F+GTA++ETYL+W
Subjt:  AILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNL---MQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEW

Query:  ERKIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKRYVLKHHEQELKTKLQALK
        ERKIEHVFDCNTFS+NKKMKL   EFT++A  WY +LKS++RRKEEDPI+TW+E K+AMRKR+V KH+E++LKTKLQ+L+
Subjt:  ERKIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKRYVLKHHEQELKTKLQALK

XP_016902063.1 PREDICTED: uncharacterized protein LOC107991521 [Cucumis melo]6.37e-106100Show/hide
Query:  MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEWER
        MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEWER
Subjt:  MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEWER

Query:  KIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKR
        KIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKR
Subjt:  KIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKR

TrEMBL top hitse value%identityAlignment
A0A1S4E1G3 uncharacterized protein LOC1079915218.0e-81100Show/hide
Query:  MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEWER
        MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEWER
Subjt:  MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEWER

Query:  KIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKR
        KIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKR
Subjt:  KIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKR

A0A5A7TZH9 Retrotrans_gag domain-containing protein3.6e-8198.77Show/hide
Query:  MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEWER
        MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEWER
Subjt:  MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEWER

Query:  KIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKRYVL
        KIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKR  L
Subjt:  KIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKRYVL

A0A5D3C3D3 F15O4.137.0e-6169.06Show/hide
Query:  MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNL---MQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLE
        +AILQAIQGM++ +R++RQERRAQQQRE R  QEDE + DL   ERQ+GGR N+RG+GRNNL   MQPRR+ER  EDR  G+KLKIPPF+GTA++ETYL+
Subjt:  MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNL---MQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLE

Query:  WERKIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKRYVLKHHEQELKTKLQALK
        WERKIEHVFDCNTFS+NKKMKL   EFT++A  WY +LKS++RRKEEDPI+TW+E K+AMRKR+V KH+E++LKTKLQ+L+
Subjt:  WERKIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKRYVLKHHEQELKTKLQALK

A0A5D3CK70 F15O4.137.0e-6169.06Show/hide
Query:  MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNL---MQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLE
        +AILQAIQGM++ +R++RQERRAQQQRE R  QEDE + DL   ERQ+GGR N+RG+GRNNL   MQPRR+ER  EDR  G+KLKIPPF+GTA++ETYL+
Subjt:  MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNL---MQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLE

Query:  WERKIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKRYVLKHHEQELKTKLQALK
        WERKIEHVFDCNTFS+NKKMKL   EFT++A  WY +LKS++RRKEEDPI+TW+E K+AMRKR+V KH+E++LKTKLQ+L+
Subjt:  WERKIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKRYVLKHHEQELKTKLQALK

A0A5D3DRJ1 F15O4.137.0e-6169.06Show/hide
Query:  MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNL---MQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLE
        +AILQAIQGM++ +R++RQERRAQQQRE R  QEDE + DL   ERQ+GGR N+RG+GRNNL   MQPRR+ER  EDR  G+KLKIPPF+GTA++ETYL+
Subjt:  MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNL---MQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLE

Query:  WERKIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKRYVLKHHEQELKTKLQALK
        WERKIEHVFDCNTFS+NKKMKL   EFT++A  WY +LKS++RRKEEDPI+TW+E K+AMRKR+V KH+E++LKTKLQ+L+
Subjt:  WERKIEHVFDCNTFSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKRYVLKHHEQELKTKLQALK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATTCTTCAAGCCATTCAAGGAATGATGAAAAGGATTAGGAAAGATAGGCAAGAAAGGAGGGCACAACAACAAAGAGAAGAACGAGTCTTGCAAGAAGATGAGGA
AGTGATTGATTTAGTTGAACAAGAAAGACAAGTTGGAGGAAGAGAAAACATGAGAGGAAAAGGGAGAAATAATCTTATGCAACCTCGTAGACTCGAAAGATTTGATGAAG
ATAGAGGCAATGGAATTAAGCTTAAAATTCCACCCTTTAGTGGAACGGCAAATGCAGAGACATACTTGGAATGGGAAAGAAAGATAGAACATGTGTTTGATTGCAACACA
TTTAGTGACAATAAGAAGATGAAACTTATCAGTGTCGAATTCACTAGCCATGCCGAAAATTGGTATCAACATCTCAAATCCAAAAAAAGAAGGAAAGAGGAAGATCCCAT
CAAAACGTGGAAAGAATTTAAAGATGCCATGAGAAAAAGGTATGTTCTAAAACATCATGAACAAGAATTGAAAACTAAATTGCAAGCTTTAAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCATTCTTCAAGCCATTCAAGGAATGATGAAAAGGATTAGGAAAGATAGGCAAGAAAGGAGGGCACAACAACAAAGAGAAGAACGAGTCTTGCAAGAAGATGAGGA
AGTGATTGATTTAGTTGAACAAGAAAGACAAGTTGGAGGAAGAGAAAACATGAGAGGAAAAGGGAGAAATAATCTTATGCAACCTCGTAGACTCGAAAGATTTGATGAAG
ATAGAGGCAATGGAATTAAGCTTAAAATTCCACCCTTTAGTGGAACGGCAAATGCAGAGACATACTTGGAATGGGAAAGAAAGATAGAACATGTGTTTGATTGCAACACA
TTTAGTGACAATAAGAAGATGAAACTTATCAGTGTCGAATTCACTAGCCATGCCGAAAATTGGTATCAACATCTCAAATCCAAAAAAAGAAGGAAAGAGGAAGATCCCAT
CAAAACGTGGAAAGAATTTAAAGATGCCATGAGAAAAAGGTATGTTCTAAAACATCATGAACAAGAATTGAAAACTAAATTGCAAGCTTTAAAGTAG
Protein sequenceShow/hide protein sequence
MAILQAIQGMMKRIRKDRQERRAQQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKIPPFSGTANAETYLEWERKIEHVFDCNT
FSDNKKMKLISVEFTSHAENWYQHLKSKKRRKEEDPIKTWKEFKDAMRKRYVLKHHEQELKTKLQALK