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IVF0012666 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012666
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionIntegrase core domain containing protein
Genome locationchr09:4916568..4917320
RNA-Seq ExpressionIVF0012666
SyntenyIVF0012666
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036141.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]3.63e-1839.13Show/hide
Query:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLH---------------YLRIMKTNADNLDQARSPVPFRCLISQRMILDRTLTLISLVETNLTK
        M  +VAFQLM FN   DLWEAIQ+LFG+QSR EEDFL                YLRIMKTN +NL Q +  + +  + S+ +I ++ L            
Subjt:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLH---------------YLRIMKTNADNLDQARSPVPFRCLISQRMILDRTLTLISLVETNLTK

Query:  VDSIVETTIMAADVVEEENRGFNSN------QNGNQTPTIAFVATQNSTSFATPETVVDTN
                       E +N    S        N NQ  T AFV T NS SF TPETV+D+N
Subjt:  VDSIVETTIMAADVVEEENRGFNSN------QNGNQTPTIAFVATQNSTSFATPETVVDTN

KAA0057475.1 uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa]2.86e-4155.87Show/hide
Query:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLH---------------YLRIMKTNADNLDQARSPVPFRCLISQRMI-----------------
        MVPDVA QLM FNT  DLWEAIQNLFGI+SRAEE FL                YLRIMK NADNL QA SPVP R LISQ ++                 
Subjt:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLH---------------YLRIMKTNADNLDQARSPVPFRCLISQRMI-----------------

Query:  ----LDRTLTLI---SLVETNLTKVDSIVETTIMAADVVEEENRGFNSNQNGNQTPTIAFVATQNSTSFATPETVVDTN
            LD    L+   +LVE  L K++S  ET +MAADVVEEENRGFN NQNG Q P  AF+ TQ S+S ATPETVVDTN
Subjt:  ----LDRTLTLI---SLVETNLTKVDSIVETTIMAADVVEEENRGFNSNQNGNQTPTIAFVATQNSTSFATPETVVDTN

KGN44003.1 hypothetical protein Csa_016232 [Cucumis sativus]6.49e-1958.75Show/hide
Query:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLH---------------YLRIMKTNADNLDQARSPVPFRCLISQ
        M P+VA QLM FNT  DLWEAIQ+LFG+Q RAEEDFL                YL  MKTN DNLDQA S VP   LISQ
Subjt:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLH---------------YLRIMKTNADNLDQARSPVPFRCLISQ

KGN59849.1 hypothetical protein Csa_001181 [Cucumis sativus]1.43e-4258.74Show/hide
Query:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLH---------------YLRIMKTNADNLDQARSPVPFRCLISQRMILDRTLTLISLVETNLTK
        MVPDV  Q M FNTT DLW+ IQ+LFG+QSR EEDFLH               YLRIMKTN DNL QA SPVP R  ISQ +I+DR L  I+LVE +L K
Subjt:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLH---------------YLRIMKTNADNLDQARSPVPFRCLISQRMILDRTLTLISLVETNLTK

Query:  VDSIVETTIMAADVVEEENRGFNSNQNGNQTPTIAFVATQNST
        +DS V TT MA  VVEEEN+G N + NGNQ+   AF+ TQN T
Subjt:  VDSIVETTIMAADVVEEENRGFNSNQNGNQTPTIAFVATQNST

TYJ96311.1 uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa]2.10e-1942.31Show/hide
Query:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLH---------------YLRIMKTNADNLDQARSPVPFRCLISQRMILDRTLTLISLVETNLTK
        M PDVA QLM F    DLW+A Q+ FG+QSRAEEDFL                YL +MKTN DNL Q  SPVP R LISQ              +    K
Subjt:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLH---------------YLRIMKTNADNLDQARSPVPFRCLISQRMILDRTLTLISLVETNLTK

Query:  VDSIVETTIMAADVVEEENRGFNSNQNGNQTPTIA-FVATQNSTSFATPETVVDTN
                IM  +           + NG+ +P  A FV+TQN+T FATP+TVVD N
Subjt:  VDSIVETTIMAADVVEEENRGFNSNQNGNQTPTIA-FVATQNSTSFATPETVVDTN

TrEMBL top hitse value%identityAlignment
A0A0A0LFV1 Uncharacterized protein3.7e-3358.74Show/hide
Query:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLH---------------YLRIMKTNADNLDQARSPVPFRCLISQRMILDRTLTLISLVETNLTK
        MVPDV  Q M FNTT DLW+ IQ+LFG+QSR EEDFLH               YLRIMKTN DNL QA SPVP R  ISQ +I+DR L  I+LVE +L K
Subjt:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLH---------------YLRIMKTNADNLDQARSPVPFRCLISQRMILDRTLTLISLVETNLTK

Query:  VDSIVETTIMAADVVEEENRGFNSNQNGNQTPTIAFVATQNST
        +DS V TT MA  VVEEEN+G N + NGNQ+   AF+ TQN T
Subjt:  VDSIVETTIMAADVVEEENRGFNSNQNGNQTPTIAFVATQNST

A0A5A7UY76 Integrase, catalytic core6.6e-1443.88Show/hide
Query:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLH---------------YLRIMKTNADNLDQARSPVPFRCLISQRMILDRTLTLISLVETNLTK
        M  +VAFQLM FNT  DL EAIQ+LFG+QSR EEDFL                YLRIMKTNA+NL QA SP+P R LISQ         L+ L E     
Subjt:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLH---------------YLRIMKTNADNLDQARSPVPFRCLISQRMILDRTLTLISLVETNLTK

Query:  VDSIVETTIMAADVVEEENRGFN-SNQNGNQTPTIAFVA
                +  A V   +NR  N + Q+GN  P +  V+
Subjt:  VDSIVETTIMAADVVEEENRGFN-SNQNGNQTPTIAFVA

A0A5D3BCH9 Uncharacterized protein3.2e-1642.31Show/hide
Query:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFL---------------HYLRIMKTNADNLDQARSPVPFRCLISQRMILDRTLTLISLVETNLTK
        M PDVA QLM F    DLW+A Q+ FG+QSRAEEDFL                YL +MKTN DNL Q  SPVP R LISQ           +  +    K
Subjt:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFL---------------HYLRIMKTNADNLDQARSPVPFRCLISQRMILDRTLTLISLVETNLTK

Query:  VDSIVETTIMAADVVEEENRGFNSNQNGNQTPTIA-FVATQNSTSFATPETVVDTN
                IM  +           + NG+ +P  A FV+TQN+T FATP+TVVD N
Subjt:  VDSIVETTIMAADVVEEENRGFNSNQNGNQTPTIA-FVATQNSTSFATPETVVDTN

A0A5D3CPY2 Retrotransposon protein, putative, Ty1-copia subclass4.6e-1541.03Show/hide
Query:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLH---------------YLRIMKTNADNLDQARSPVPFRCLISQRMILDRTLTLISLVETNLTK
        M  +VAFQLM FN   DLWEAIQ+LFG+QSR EEDFL                YLRIMKTN +NL Q +  + +  + S+ +I ++ L        N  K
Subjt:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLH---------------YLRIMKTNADNLDQARSPVPFRCLISQRMILDRTLTLISLVETNLTK

Query:  VDSIVETTIMAADVVEEENRGFN-SNQNGNQTPTIAFVATQNSTSFATPETVVDTN
                       + +   F  SN N N T   AFV T NS SF TPETV+D+N
Subjt:  VDSIVETTIMAADVVEEENRGFN-SNQNGNQTPTIAFVATQNSTSFATPETVVDTN

A0A5D3E3L7 Uncharacterized protein5.8e-3455.87Show/hide
Query:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLH---------------YLRIMKTNADNLDQARSPVPFRCLISQRMI-----------------
        MVPDVA QLM FNT  DLWEAIQNLFGI+SRAEE FL                YLRIMK NADNL QA SPVP R LISQ ++                 
Subjt:  MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLH---------------YLRIMKTNADNLDQARSPVPFRCLISQRMI-----------------

Query:  ----LDRTLTLI---SLVETNLTKVDSIVETTIMAADVVEEENRGFNSNQNGNQTPTIAFVATQNSTSFATPETVVDTN
            LD    L+   +LVE  L K++S  ET +MAADVVEEENRGFN NQNG Q P  AF+ TQ S+S ATPETVVDTN
Subjt:  ----LDRTLTLI---SLVETNLTKVDSIVETTIMAADVVEEENRGFNSNQNGNQTPTIAFVATQNSTSFATPETVVDTN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCCAGATGTAGCGTTTCAACTCATGGAATTTAATACAACAAATGATCTTTGGGAGGCCATTCAAAATTTATTTGGAATTCAATCAAGGGCAGAAGAAGATTTTCT
TCATTACTTAAGAATTATGAAAACTAACGCGGATAATCTCGACCAAGCCAGAAGCCCCGTCCCTTTTCGCTGTTTAATTTCACAGCGAATGATACTCGATAGAACTCTAA
CTCTCATCAGTTTGGTGGAAACTAATTTAACCAAAGTGGACAGCATAGTGGAAACAACCATAATGGCCGCGGACGTGGTCGAAGAAGAGAATAGGGGATTTAACTCAAAT
CAAAATGGAAATCAAACTCCTACTATTGCCTTTGTCGCCACTCAAAACTCAACTTCATTTGCCACACCTGAGACTGTAGTTGATACAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGCCAGATGTAGCGTTTCAACTCATGGAATTTAATACAACAAATGATCTTTGGGAGGCCATTCAAAATTTATTTGGAATTCAATCAAGGGCAGAAGAAGATTTTCT
TCATTACTTAAGAATTATGAAAACTAACGCGGATAATCTCGACCAAGCCAGAAGCCCCGTCCCTTTTCGCTGTTTAATTTCACAGCGAATGATACTCGATAGAACTCTAA
CTCTCATCAGTTTGGTGGAAACTAATTTAACCAAAGTGGACAGCATAGTGGAAACAACCATAATGGCCGCGGACGTGGTCGAAGAAGAGAATAGGGGATTTAACTCAAAT
CAAAATGGAAATCAAACTCCTACTATTGCCTTTGTCGCCACTCAAAACTCAACTTCATTTGCCACACCTGAGACTGTAGTTGATACAAACTAG
Protein sequenceShow/hide protein sequence
MVPDVAFQLMEFNTTNDLWEAIQNLFGIQSRAEEDFLHYLRIMKTNADNLDQARSPVPFRCLISQRMILDRTLTLISLVETNLTKVDSIVETTIMAADVVEEENRGFNSN
QNGNQTPTIAFVATQNSTSFATPETVVDTN