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IVF0012669 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012669
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr04:7739136..7739462
RNA-Seq ExpressionIVF0012669
SyntenyIVF0012669
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004518 - nuclease activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036837.1 E3 ubiquitin-protein ligase RGLG2 [Cucumis melo var. makuwa]1.78e-39100Show/hide
Query:  EEGDTEGETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSR
        EEGDTEGETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSR
Subjt:  EEGDTEGETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSR

KAA0039528.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.44e-1056.6Show/hide
Query:  EVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKL
        E+A+ SLN +  LSSP+T+K+KG ++G E+V L+DGGATHNFI KE+V   K+
Subjt:  EVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKL

KAE8650876.1 hypothetical protein Csa_002497, partial [Cucumis sativus]4.36e-1047.83Show/hide
Query:  ETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKL
        ETN ND+       + E+A+ SLN +  L+S +T+K+KG ++G EVV L+DGGATHNFI +E+V   K+
Subjt:  ETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKL

XP_030505320.1 uncharacterized protein LOC115720307 [Cannabis sativa]2.22e-0954.24Show/hide
Query:  EVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKLPTSNTE
        +V   SLN +  L+SP+T+K+ G+V G EV  L+D GATHNFI   LVT  KLP S TE
Subjt:  EVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKLPTSNTE

XP_038904464.1 uncharacterized protein LOC120090832 [Benincasa hispida]3.70e-1155Show/hide
Query:  DKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKLPTSNT
        D E A  SLN +A + SP+T+KV+G +   +VV L+D GA+HNFIDKELV+S KLP   T
Subjt:  DKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKLPTSNT

TrEMBL top hitse value%identityAlignment
A0A0D3CF76 Uncharacterized protein2.1e-0748.44Show/hide
Query:  EVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKLPTSNT
        E+ ++ EVA  S++ +  +SS +T+K+KG + G EVV L+D GAT+NF+ KELVT  KL T  T
Subjt:  EVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKLPTSNT

A0A5A7T5F6 E3 ubiquitin-protein ligase RGLG23.5e-3198.67Show/hide
Query:  EEEGDTEGETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSR
        +EEGDTEGETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSR
Subjt:  EEEGDTEGETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSR

A0A5A7T7D3 Ty3-gypsy retrotransposon protein1.3e-0644.3Show/hide
Query:  EEEGDTEGETNQNDDGVVEVRDD-KEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKLP
        EEE   E E    +  V+E++++ K     S+N +  LS+P+T+KVK  +KG EVV L+D G+THNFI K++V + KLP
Subjt:  EEEGDTEGETNQNDDGVVEVRDD-KEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKLP

A0A5D3C129 Ty3-gypsy retrotransposon protein1.0e-0644.3Show/hide
Query:  DTEGETNQNDDGVVEVRDDKEV-AHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKLPTSNT
        + +GE    D+ V+EVR  + +    S+N +  L++P  +KVKG VK  +VV L+D GATHNFI K+LVT+  LP   T
Subjt:  DTEGETNQNDDGVVEVRDDKEV-AHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKLPTSNT

A0A5D3CTU6 Ty3-gypsy retrotransposon protein1.2e-0743.75Show/hide
Query:  EEEGDTEGETNQNDDGVVEVRDDK---EVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKL
        +E  D   ET+Q  + +    +++   E+A+ SLN +  LSSP+T+K+KG ++G E+V L+DGGATHNFI KE+V   K+
Subjt:  EEEGDTEGETNQNDDGVVEVRDDK---EVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G30770.1 Eukaryotic aspartyl protease family protein3.6e-0435Show/hide
Query:  EGDTEGETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKLPTSNT
        EG+T G  N+  +G++E  D K +         E +  + ++  G +   +VV ++D GAT+NFI  EL    KLPTS T
Subjt:  EGDTEGETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKLPTSNT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAGGACATCCCTGTGGGAAGAGGAAGGCGATACTGAAGGAGAGACAAACCAAAATGACGATGGTGTCGTGGAGGTAAGGGATGACAAAGAAGTGGCCCATTTTTC
CTTGAACTTGATGGCAGAATTAAGCTCTCCACAGACGGTGAAGGTCAAGGGGTTGGTTAAAGGACTTGAGGTGGTGGCATTGGTAGACGGAGGAGCAACCCACAACTTTA
TTGACAAAGAATTGGTGACCTCACGTAAATTGCCAACGTCGAACACAGAGGATCCATTCAGGGCACTGGAATTTGAAAAGGAGTGGTCCTCACTATTGCTGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAGGACATCCCTGTGGGAAGAGGAAGGCGATACTGAAGGAGAGACAAACCAAAATGACGATGGTGTCGTGGAGGTAAGGGATGACAAAGAAGTGGCCCATTTTTC
CTTGAACTTGATGGCAGAATTAAGCTCTCCACAGACGGTGAAGGTCAAGGGGTTGGTTAAAGGACTTGAGGTGGTGGCATTGGTAGACGGAGGAGCAACCCACAACTTTA
TTGACAAAGAATTGGTGACCTCACGTAAATTGCCAACGTCGAACACAGAGGATCCATTCAGGGCACTGGAATTTGAAAAGGAGTGGTCCTCACTATTGCTGATTTGA
Protein sequenceShow/hide protein sequence
MGRTSLWEEEGDTEGETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKLPTSNTEDPFRALEFEKEWSSLLLI