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IVF0012699 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012699
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 297 family
Genome locationchr01:4491205..4492478
RNA-Seq ExpressionIVF0012699
SyntenyIVF0012699
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041704.1 uncharacterized protein E6C27_scaffold67G00370 [Cucumis melo var. makuwa]6.44e-5071.32Show/hide
Query:  DKILNKNEDVSLSKNDPNLENVDSNTQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLG
        D + + N+ VSL   D  LE++   TQEEHDKFNEL DQ TL++VE EFAKNK S+DD SIFLDF ASVNDEH LVDNLATNGHH LDNDFASSNEH LG
Subjt:  DKILNKNEDVSLSKNDPNLENVDSNTQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLG

Query:  RNINNDDEHTLKGIDNENDLGTNVVEIAYEFDDNFF
        RNINND+EHTLK ID ENDLGTN++EIA + DD  F
Subjt:  RNINNDDEHTLKGIDNENDLGTNVVEIAYEFDDNFF

KAA0050551.1 uncharacterized protein E6C27_scaffold673G00050 [Cucumis melo var. makuwa]6.19e-7094.26Show/hide
Query:  DPNLENVD-SNTQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNINNDDEHTLKGI
        D  L NV+   TQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNINNDDEHTLKGI
Subjt:  DPNLENVD-SNTQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNINNDDEHTLKGI

Query:  DNENDLGTNVVEIAYEFDDNFF
        DNENDLGTNVVEIAYEFDDNFF
Subjt:  DNENDLGTNVVEIAYEFDDNFF

KAA0066473.1 hypothetical protein E6C27_scaffold25G00080 [Cucumis melo var. makuwa]8.16e-4151.96Show/hide
Query:  MKVSISELGDKLNQLATHVLKTEGKGKLSAQSNHANVSDITLRSDKILNKNEDVS--LSKNDPNLENVDSNTQEEHDKFNELFDQATLKHVEYEFAKNKP
        MK SISELGDKLNQLATHV+K E K KL AQ NHAN  D   + +K +  N   S   S N+ +   VD+       + ++   +        E  K   
Subjt:  MKVSISELGDKLNQLATHVLKTEGKGKLSAQSNHANVSDITLRSDKILNKNEDVS--LSKNDPNLENVDSNTQEEHDKFNELFDQATLKHVEYEFAKNKP

Query:  SNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNINNDDEHTLKGIDNENDLGTNVVEIAYEFDD
         N  L   +  + SVNDEH+LVDNL TN HH LDN+F SSNEHDLGRNINNDD HTLKGID END GTN+ +IA E DD
Subjt:  SNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNINNDDEHTLKGIDNENDLGTNVVEIAYEFDD

KAA0066481.1 Retrotransposon gag protein [Cucumis melo var. makuwa]2.45e-4971.32Show/hide
Query:  DVSLSKNDPNLENVDS----NTQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNIN
        DV  S N  +L  +D+     T +EHD+FN+L +QATL++++ EFAKNKPS+DDLSIFLDFVASVNDEHVLVDN+ATN  HVLDNDFASSNEHDLGRNIN
Subjt:  DVSLSKNDPNLENVDS----NTQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNIN

Query:  NDDEHTLKGIDNENDLGTNVVEIAYEFDD
        NDDEHTLKGID ENDLG N+ EIA+E +D
Subjt:  NDDEHTLKGIDNENDLGTNVVEIAYEFDD

KAA0066992.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]4.23e-5446.3Show/hide
Query:  MKVSISELGDKLNQLATHVLKTEGKGKLSAQSNHANVSDITLRSDKILNKNEDVSLSKNDPNLENVDSNTQEE---------------------------
        MK SISELG KLNQLAT+VLK EGKGKL AQSNHANVS ITLRSDK LNKN+DVSLS+ND NLENVDSN +EE                           
Subjt:  MKVSISELGDKLNQLATHVLKTEGKGKLSAQSNHANVSDITLRSDKILNKNEDVSLSKNDPNLENVDSNTQEE---------------------------

Query:  -------------------------------------------------------------------------------------HDKFNELFDQATLKH
                                                                                             HD FNEL DQATL++
Subjt:  -------------------------------------------------------------------------------------HDKFNELFDQATLKH

Query:  VEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNINNDDEHTLKGI
        VE EFAKNKPS+DDLSIFL FVASVNDEHV VDN+ATN  H LDNDF SSNEHDLGRNI +D+ H +K +
Subjt:  VEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNINNDDEHTLKGI

TrEMBL top hitse value%identityAlignment
A0A5A7TE46 Uncharacterized protein9.0e-4071.32Show/hide
Query:  DKILNKNEDVSLSKNDPNLENVDSNTQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLG
        D + + N+ VSL   D  LE++   TQEEHDKFNEL DQ TL++VE EFAKNK S+DD SIFLDF ASVNDEH LVDNLATNGHH LDNDFASSNEH LG
Subjt:  DKILNKNEDVSLSKNDPNLENVDSNTQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLG

Query:  RNINNDDEHTLKGIDNENDLGTNVVEIAYEFDDNFF
        RNINND+EHTLK ID ENDLGTN++EIA + DD  F
Subjt:  RNINNDDEHTLKGIDNENDLGTNVVEIAYEFDDNFF

A0A5A7VEJ8 Uncharacterized protein3.1e-3251.96Show/hide
Query:  MKVSISELGDKLNQLATHVLKTEGKGKLSAQSNHANVSDITLRSDKILNKNEDVS--LSKNDPNLENVDSNTQEEHDKFNELFDQATLKHVEYEFAKNKP
        MK SISELGDKLNQLATHV+K E K KL AQ NHAN  D   + +K +  N   S   S N+ +   VD+       + ++   +        E  K   
Subjt:  MKVSISELGDKLNQLATHVLKTEGKGKLSAQSNHANVSDITLRSDKILNKNEDVS--LSKNDPNLENVDSNTQEEHDKFNELFDQATLKHVEYEFAKNKP

Query:  SNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNINNDDEHTLKGIDNENDLGTNVVEIAYEFDD
         N  L   +  + SVNDEH+LVDNL TN HH LDN+F SSNEHDLGRNINNDD HTLKGID END GTN+ +IA E DD
Subjt:  SNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNINNDDEHTLKGIDNENDLGTNVVEIAYEFDD

A0A5D3BDS0 Transposon Ty3-I Gag-Pol polyprotein1.0e-4346.64Show/hide
Query:  MKVSISELGDKLNQLATHVLKTEGKGKLSAQSNHANVSDITLRSDKILNKNEDVSLSKNDPNLENVDSNTQ-----------------------------
        MK SISELG KLNQLAT+VLK EGKGKL AQSNHANVS ITLRSDK LNKN+DVSLS+ND NLENVDSN +                             
Subjt:  MKVSISELGDKLNQLATHVLKTEGKGKLSAQSNHANVSDITLRSDKILNKNEDVSLSKNDPNLENVDSNTQ-----------------------------

Query:  -----------------------------------------------------------------------------------EEHDKFNELFDQATLKH
                                                                                           EEHD FNEL DQATL++
Subjt:  -----------------------------------------------------------------------------------EEHDKFNELFDQATLKH

Query:  VEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNINNDDEHTLK
        VE EFAKNKPS+DDLSIFL FVASVNDEHV VDN+ATN  H LDNDF SSNEHDLGRNI +D+ H +K
Subjt:  VEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNINNDDEHTLK

A0A5D3D5G7 Uncharacterized protein7.6e-5594.26Show/hide
Query:  DPNLENVD-SNTQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNINNDDEHTLKGI
        D  L NV+   TQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNINNDDEHTLKGI
Subjt:  DPNLENVD-SNTQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNINNDDEHTLKGI

Query:  DNENDLGTNVVEIAYEFDDNFF
        DNENDLGTNVVEIAYEFDDNFF
Subjt:  DNENDLGTNVVEIAYEFDDNFF

A0A5D3DU65 Retrotransposon gag protein5.9e-3971.32Show/hide
Query:  DVSLSKNDPNLENVDS----NTQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNIN
        DV  S N  +L  +D+     T +EHD+FN+L +QATL++++ EFAKNKPS+DDLSIFLDFVASVNDEHVLVDN+ATN  HVLDNDFASSNEHDLGRNIN
Subjt:  DVSLSKNDPNLENVDS----NTQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNIN

Query:  NDDEHTLKGIDNENDLGTNVVEIAYEFDD
        NDDEHTLKGID ENDLG N+ EIA+E +D
Subjt:  NDDEHTLKGIDNENDLGTNVVEIAYEFDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTATCCATTTCCGAGTTAGGAGATAAGCTTAATCAATTAGCAACACACGTTCTTAAAACGGAAGGGAAAGGAAAACTTTCTGCCCAATCCAACCATGCAAATGT
GAGTGATATTACTTTAAGAAGCGATAAAATTTTGAATAAGAATGAAGATGTCTCTTTGTCTAAAAATGATCCTAACTTAGAGAACGTTGATTCAAATACACAAGAAGAGC
ATGATAAATTCAATGAGCTTTTTGATCAAGCAACTTTAAAACATGTTGAATATGAATTTGCTAAGAACAAACCTAGTAATGATGATCTCTCTATTTTTCTTGACTTTGTT
GCTAGTGTAAATGATGAGCATGTCTTGGTTGATAATCTTGCAACAAATGGACATCATGTTCTAGATAATGATTTTGCATCTAGTAATGAGCATGATCTAGGAAGAAACAT
TAATAATGATGATGAGCATACCTTGAAAGGCATTGACAATGAAAATGATCTTGGCACAAACGTTGTTGAAATTGCTTATGAATTTGATGATAATTTTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTATCCATTTCCGAGTTAGGAGATAAGCTTAATCAATTAGCAACACACGTTCTTAAAACGGAAGGGAAAGGAAAACTTTCTGCCCAATCCAACCATGCAAATGT
GAGTGATATTACTTTAAGAAGCGATAAAATTTTGAATAAGAATGAAGATGTCTCTTTGTCTAAAAATGATCCTAACTTAGAGAACGTTGATTCAAATACACAAGAAGAGC
ATGATAAATTCAATGAGCTTTTTGATCAAGCAACTTTAAAACATGTTGAATATGAATTTGCTAAGAACAAACCTAGTAATGATGATCTCTCTATTTTTCTTGACTTTGTT
GCTAGTGTAAATGATGAGCATGTCTTGGTTGATAATCTTGCAACAAATGGACATCATGTTCTAGATAATGATTTTGCATCTAGTAATGAGCATGATCTAGGAAGAAACAT
TAATAATGATGATGAGCATACCTTGAAAGGCATTGACAATGAAAATGATCTTGGCACAAACGTTGTTGAAATTGCTTATGAATTTGATGATAATTTTTTTTGA
Protein sequenceShow/hide protein sequence
MKVSISELGDKLNQLATHVLKTEGKGKLSAQSNHANVSDITLRSDKILNKNEDVSLSKNDPNLENVDSNTQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFV
ASVNDEHVLVDNLATNGHHVLDNDFASSNEHDLGRNINNDDEHTLKGIDNENDLGTNVVEIAYEFDDNFF