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IVF0012727 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012727
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Genome locationchr06:5439409..5439810
RNA-Seq ExpressionIVF0012727
SyntenyIVF0012727
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032462.1 gag-proteinase polyprotein [Cucumis melo var. makuwa]6.68e-7690.77Show/hide
Query:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT
        MEIIREGPS SR P+LDGKNYSYWKP MIFFIKTLDGKAWRALVGGYEPPMVT NGVSVPK E+DWT+AEEQASVGNARAINAIFNCVDLN FKLINS T
Subjt:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT

Query:  TAKEAWKILKVAYEGTSKVKISILQLITSK
        TAKEAWKIL+VAYEGTSKVKIS LQLITSK
Subjt:  TAKEAWKILKVAYEGTSKVKISILQLITSK

KAA0039062.1 gag-pol polyprotein [Cucumis melo var. makuwa]7.53e-7490.08Show/hide
Query:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT
        MEIIREGPS SRPP+LDGKNYSYWKP MIFFIKTLDGKAWRALVGGYEPPM+T NGV VPK EIDWT+AE QASVGNARAINAIFN VDLNVFKLINS T
Subjt:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT

Query:  TAKEAWKILKVAYEGTSKVKI
        TAKEAWKIL+VAYEGTSKVKI
Subjt:  TAKEAWKILKVAYEGTSKVKI

KAA0053604.1 gag-pol polyprotein [Cucumis melo var. makuwa]9.77e-7485.38Show/hide
Query:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT
        MEII+EGPS SRPPILDGKNYSYWKP MIFFIKTLDGKAWRAL+ GY PPM+T NGVSVPK E+DWTNAEEQASVGNARA+NAIFN VDLNVFKLIN   
Subjt:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT

Query:  TAKEAWKILKVAYEGTSKVKISILQLITSK
        TAKEAWK L+VAYEGTSKVKIS LQLIT K
Subjt:  TAKEAWKILKVAYEGTSKVKISILQLITSK

KAA0061314.1 gag-pol polyprotein [Cucumis melo var. makuwa]5.85e-88100Show/hide
Query:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT
        MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT
Subjt:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT

Query:  TAKEAWKILKVAYEGTSKVKISILQLITSK
        TAKEAWKILKVAYEGTSKVKISILQLITSK
Subjt:  TAKEAWKILKVAYEGTSKVKISILQLITSK

TYK19191.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.41e-7486.15Show/hide
Query:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT
        MEII+EGPS SRPPILDGKNYSYWKP MIFFIKTLDGKAWRALV GY PPM+T NGVSVPK E+DWTNAEEQASVGNARA+NAIFN VDLNVFKLIN   
Subjt:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT

Query:  TAKEAWKILKVAYEGTSKVKISILQLITSK
        TAKEAWK L+VAYEGTSKVKIS LQLIT K
Subjt:  TAKEAWKILKVAYEGTSKVKISILQLITSK

TrEMBL top hitse value%identityAlignment
A0A5A7UJR8 Putative mitochondrial protein2.4e-5886.92Show/hide
Query:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT
        MEIIREGPS SRPP+LDGKNYSYWKP MIFFIKTLDGKAWRALV GY+PPM+TANGVSVPK E+DWT+AEEQASVGNARA NAIFN VDLN+FKLINS +
Subjt:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT

Query:  TAKEAWKILKVAYEGTSKVKISILQLITSK
        TAKEAWK L+VAYEGTSKVKIS LQLITSK
Subjt:  TAKEAWKILKVAYEGTSKVKISILQLITSK

A0A5D3BBI3 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-5890Show/hide
Query:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT
        MEIIREGPS S PP+LDGKNYSYWKPHMIFFIKTLDGKAWR LVGGYEPPMVT N VSVPK EIDWT+AEEQASVGNARAINAIF  VDLNVFKLINS T
Subjt:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT

Query:  TAKEAWKILKVAYEGTSKVKISILQLITSK
        TAKEA KILKVAYEGTSKVKIS LQLITSK
Subjt:  TAKEAWKILKVAYEGTSKVKISILQLITSK

A0A5D3CSU4 Gag-pol polyprotein3.4e-68100Show/hide
Query:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT
        MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT
Subjt:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT

Query:  TAKEAWKILKVAYEGTSKVKISILQLITSK
        TAKEAWKILKVAYEGTSKVKISILQLITSK
Subjt:  TAKEAWKILKVAYEGTSKVKISILQLITSK

A0A5D3D1H0 Gag-proteinase polyprotein6.9e-6190.77Show/hide
Query:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT
        MEIIREGPS SR P+LDGKNYSYWKP MIFFIKTLDGKAWRALVGGYEPPMVT NGVSVPK E+DWT+AEEQASVGNARAINAIFNCVDLN FKLINS T
Subjt:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT

Query:  TAKEAWKILKVAYEGTSKVKISILQLITSK
        TAKEAWKIL+VAYEGTSKVKIS LQLITSK
Subjt:  TAKEAWKILKVAYEGTSKVKISILQLITSK

A0A5D3DIW3 Gag-pol polyprotein5.4e-5887.69Show/hide
Query:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT
        MEIIREGP+ SRP +LDGKNYSYWKP MIFFIKTLDGKAWRALV GY+PPMVT +G SVPK E+DWTNAEEQASVGNARAINAIFN VDLNVFKLINS T
Subjt:  MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFT

Query:  TAKEAWKILKVAYEGTSKVKISILQLITSK
        T KEAWKILKVAYEGTSKVKIS LQLITSK
Subjt:  TAKEAWKILKVAYEGTSKVKISILQLITSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATAATCAGAGAGGGACCATCAACTTCACGTCCTCCTATACTGGACGGTAAAAATTACTCTTATTGGAAGCCTCACATGATATTTTTCATTAAAACCTTAGATGG
AAAAGCATGGAGAGCACTTGTTGGTGGTTATGAACCTCCAATGGTTACTGCGAATGGAGTATCAGTGCCAAAACAAGAAATTGACTGGACAAATGCTGAAGAACAAGCTT
CAGTTGGGAATGCAAGAGCCATAAATGCTATCTTCAATTGTGTCGATTTAAACGTGTTCAAACTTATTAATTCCTTCACTACTGCTAAAGAAGCTTGGAAAATACTGAAA
GTGGCATATGAAGGAACTTCTAAAGTGAAGATATCCATACTGCAGTTGATAACTTCAAAATCGAAGCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATAATCAGAGAGGGACCATCAACTTCACGTCCTCCTATACTGGACGGTAAAAATTACTCTTATTGGAAGCCTCACATGATATTTTTCATTAAAACCTTAGATGG
AAAAGCATGGAGAGCACTTGTTGGTGGTTATGAACCTCCAATGGTTACTGCGAATGGAGTATCAGTGCCAAAACAAGAAATTGACTGGACAAATGCTGAAGAACAAGCTT
CAGTTGGGAATGCAAGAGCCATAAATGCTATCTTCAATTGTGTCGATTTAAACGTGTTCAAACTTATTAATTCCTTCACTACTGCTAAAGAAGCTTGGAAAATACTGAAA
GTGGCATATGAAGGAACTTCTAAAGTGAAGATATCCATACTGCAGTTGATAACTTCAAAATCGAAGCCTTGA
Protein sequenceShow/hide protein sequence
MEIIREGPSTSRPPILDGKNYSYWKPHMIFFIKTLDGKAWRALVGGYEPPMVTANGVSVPKQEIDWTNAEEQASVGNARAINAIFNCVDLNVFKLINSFTTAKEAWKILK
VAYEGTSKVKISILQLITSKSKP