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IVF0012820 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012820
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionE3 ubiquitin-protein ligase RING1-like
Genome locationchr05:26235466..26236011
RNA-Seq ExpressionIVF0012820
SyntenyIVF0012820
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061529.1 RING-H2 finger protein ATL5-like [Cucumis melo var. makuwa]5.03e-8199.13Show/hide
Query:  MATSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVAPPPVVVADLPTVATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRH
        MATSANHAARYIMDIESMFDLDTVLSGADDFYY HTAVAPPPVVVADLPTVATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRH
Subjt:  MATSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVAPPPVVVADLPTVATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRH

Query:  IAPGDKTETSKTVQV
        IAPGDKTETSKTVQV
Subjt:  IAPGDKTETSKTVQV

KAE8651508.1 hypothetical protein Csa_019333 [Cucumis sativus]8.11e-6987.61Show/hide
Query:  MATSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVAPPPVVVADLPTVAT-DDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRR
        MATSAN+AA YIMDIESMFDLDTVL+GADDFYY HT VAPPPV+VA+LPTVA  DD CAVCMEDFLPDEGGKQIPCGHVYHQSC+SSWLS+ DSCPLCR 
Subjt:  MATSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVAPPPVVVADLPTVAT-DDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRR

Query:  HIAPGDKTETSKT
        HIAPGDKTETSKT
Subjt:  HIAPGDKTETSKT

XP_011650093.1 E3 ubiquitin-protein ligase RNF115 [Cucumis sativus]6.09e-7187.93Show/hide
Query:  MATSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVAPPPVVVADLPTVAT-DDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRR
        MATSAN+AA YIMDIESMFDLDTVL+GADDFYY HT VAPPPV+VA+LPTVA  DD CAVCMEDFLPDEGGKQIPCGHVYHQSC+SSWLS+ DSCPLCR 
Subjt:  MATSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVAPPPVVVADLPTVAT-DDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRR

Query:  HIAPGDKTETSKTVQV
        HIAPGDKTETSKTVQV
Subjt:  HIAPGDKTETSKTVQV

XP_023537996.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]1.04e-5471.93Show/hide
Query:  ATSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVAPPPVVVADLPTVATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHI
        AT +  AA YIMD+ESMFDLDTVL+GADD+Y       PP VVVADLPTV TDD CAVCME+F  DEGGKQIPCGHVYHQ+CISSWLSVGD CPLCR H+
Subjt:  ATSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVAPPPVVVADLPTVATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHI

Query:  APGDKTETSKTVQV
        +  +K+ET+K VQV
Subjt:  APGDKTETSKTVQV

XP_038877426.1 E3 ubiquitin-protein ligase RNF126-like [Benincasa hispida]4.13e-6078.76Show/hide
Query:  TSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVAPPPVVVADLPTVATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIA
        T++ +AA YIMDIESMFDLDTVL+GADDFYY  T VAPPPVVVADLPTVA  D CAVC+EDFLPDE GKQIPCGHVYHQSC+SSWLSVGDSCPLCRRHIA
Subjt:  TSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVAPPPVVVADLPTVATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIA

Query:  PGDKTETSKTVQV
          ++ E  KT  V
Subjt:  PGDKTETSKTVQV

TrEMBL top hitse value%identityAlignment
A0A0A0LEZ1 RING-type domain-containing protein2.7e-5387.93Show/hide
Query:  MATSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVAPPPVVVADLPTV-ATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRR
        MATSAN+AA YIMDIESMFDLDTVL+GADDFYY HT VAPPPV+VA+LPTV A DD CAVCMEDFLPDEGGKQIPCGHVYHQSC+SSWLS+ DSCPLCR 
Subjt:  MATSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVAPPPVVVADLPTV-ATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRR

Query:  HIAPGDKTETSKTVQV
        HIAPGDKTETSKTVQV
Subjt:  HIAPGDKTETSKTVQV

A0A5A7V793 RING-H2 finger protein ATL5-like5.9e-6199.13Show/hide
Query:  MATSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVAPPPVVVADLPTVATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRH
        MATSANHAARYIMDIESMFDLDTVLSGADDFYY HTAVAPPPVVVADLPTVATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRH
Subjt:  MATSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVAPPPVVVADLPTVATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRH

Query:  IAPGDKTETSKTVQV
        IAPGDKTETSKTVQV
Subjt:  IAPGDKTETSKTVQV

A0A6J1DM93 E3 ubiquitin-protein ligase RHA1B-like2.1e-2660.55Show/hide
Query:  TSANHAARYIMDIESMFDLDTVLSGADDFYYLH-TAVAPPPVVVADLPTVATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHI
        T+ N AA Y M++  +FDLD VLSG DDF   H TA      +VADLPTV   D CAVC EDF  DEGGKQIPCGHVYH+ CISSWL+V D CPLCRR +
Subjt:  TSANHAARYIMDIESMFDLDTVLSGADDFYYLH-TAVAPPPVVVADLPTVATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHI

Query:  APGDKTETS
         P     TS
Subjt:  APGDKTETS

A0A6J1FDN7 E3 ubiquitin-protein ligase RING1-like2.6e-4072.17Show/hide
Query:  ATSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVAPPPVVVADLPTVATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSV-GDSCPLCRRH
        AT +  AARYIMD+ESMFDLDTVL+GADD+Y       PP VVVADLPTV TDD CAVCME+F  DEGGKQIPCGHVYHQ+CISSWLSV GD CPLCR H
Subjt:  ATSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVAPPPVVVADLPTVATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSV-GDSCPLCRRH

Query:  IAPGDKTETSKTVQV
        ++  +K+ET+K VQV
Subjt:  IAPGDKTETSKTVQV

A0A6J1HNM2 E3 ubiquitin-protein ligase RNF181-like7.5e-4071.3Show/hide
Query:  ATSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVA-PPPVVVADLPTVATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRH
        AT +  AA YIMD+ESMFDLDTVL+GADD+Y     +  PP VVV+DLPTV TDD CAVCME+F  DEGGKQIPCGHVYHQSCISSWLSVGD CPLCR H
Subjt:  ATSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVA-PPPVVVADLPTVATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRH

Query:  IAPGDKTETSKTVQV
        ++  +K ET+K VQV
Subjt:  IAPGDKTETSKTVQV

SwissProt top hitse value%identityAlignment
O22283 Probable E3 ubiquitin-protein ligase RHC2A6.0e-1036.84Show/hide
Query:  TAVAPPPVVVADLPTVATDDA---CAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTE
        +A+   P++  D PT    D+   CAVC E+F+     +++PC H+YH  CI  WL++ +SCP+CR  +   D T+
Subjt:  TAVAPPPVVVADLPTVATDDA---CAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTE

P0CH30 E3 ubiquitin-protein ligase RING16.0e-1044.83Show/hide
Query:  CAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTETSKTVQ
        CAVCM+DF      KQ+PC H+YH+ C+  WL + +SCP+C RH  P D  +  + V+
Subjt:  CAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTETSKTVQ

Q91YL2 E3 ubiquitin-protein ligase RNF1267.8e-1039.51Show/hide
Query:  PPPV---VVADLPTVATDD-------ACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTETS
        PPP     +  LPTV   +        C VC ED+   E  +Q+PC H++H SCI  WL   DSCP+CR+ +  G  T T+
Subjt:  PPPV---VVADLPTVATDD-------ACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTETS

Q9D0C1 E3 ubiquitin-protein ligase RNF1151.6e-1037.35Show/hide
Query:  PPPV---VVADLPTVA-------TDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTETSKT
        PPP     +  LPTV        T   C VC ED+  +E  +Q+PC H +H SCI  WL + D+CP+CR+ +   D T  +++
Subjt:  PPPV---VVADLPTVA-------TDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTETSKT

Q9Y4L5 E3 ubiquitin-protein ligase RNF1154.1e-1136.47Show/hide
Query:  PPPV---VVADLPTVATDD-------ACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTETSKTVQ
        PPP     +  LPTV            C VC ED+  +E  +Q+PC H +H SCI  WL + D+CP+CR+ +   D T  S++ +
Subjt:  PPPV---VVADLPTVATDD-------ACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTETSKTVQ

Arabidopsis top hitse value%identityAlignment
AT2G39720.1 RING-H2 finger C2A4.3e-1136.84Show/hide
Query:  TAVAPPPVVVADLPTVATDDA---CAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTE
        +A+   P++  D PT    D+   CAVC E+F+     +++PC H+YH  CI  WL++ +SCP+CR  +   D T+
Subjt:  TAVAPPPVVVADLPTVATDDA---CAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTE

AT2G44330.1 RING/U-box superfamily protein3.3e-1146.3Show/hide
Query:  LPTVATDDA---CAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCR
        L + ++DD+   CA+C EDF+  E  +++PC H+YH  CI  WL+  +SCPLCR
Subjt:  LPTVATDDA---CAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCR

AT3G60080.1 RING/U-box superfamily protein1.9e-1143.08Show/hide
Query:  PPVVVADLPTVATDDA-------CAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCR
        P + ++     +TDD+       CAVC EDF+  E  +++PC H+YH  CI  WLS  +SCPLCR
Subjt:  PPVVVADLPTVATDDA-------CAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCR

AT4G26400.1 RING/U-box superfamily protein8.6e-1235.29Show/hide
Query:  ADDFYYLHTAVAPPPVVVADLPTVATDDA--CAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTETS
        AD+    H ++     VV +LPTV   ++  C++C++DF      K++PC H +H  CI  WL +  SCP+CR  + P D+T+ +
Subjt:  ADDFYYLHTAVAPPPVVVADLPTVATDDA--CAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTETS

AT4G26400.2 RING/U-box superfamily protein8.6e-1235.29Show/hide
Query:  ADDFYYLHTAVAPPPVVVADLPTVATDDA--CAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTETS
        AD+    H ++     VV +LPTV   ++  C++C++DF      K++PC H +H  CI  WL +  SCP+CR  + P D+T+ +
Subjt:  ADDFYYLHTAVAPPPVVVADLPTVATDDA--CAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTETS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACATCAGCTAATCATGCAGCTAGGTACATCATGGACATTGAATCAATGTTCGATCTCGACACGGTCCTCAGCGGAGCTGATGACTTTTATTACTTACACACCGC
TGTAGCGCCCCCACCCGTGGTGGTTGCTGACTTACCGACCGTGGCTACGGACGATGCATGTGCGGTTTGTATGGAGGATTTTCTACCGGATGAAGGCGGTAAACAGATCC
CATGTGGCCATGTTTACCATCAATCTTGTATATCGTCTTGGCTCTCCGTCGGCGATTCTTGTCCTCTCTGCCGCCGTCATATCGCCCCCGGCGACAAAACGGAGACTTCC
AAAACCGTACAAGTTTAG
mRNA sequenceShow/hide mRNA sequence
CTTACAAATCTCTCGATAGTTTTCCTTTTCCTGTTATAACAAAAATAAACAAATACTGATCTCCATGGCTACATCAGCTAATCATGCAGCTAGGTACATCATGGACATTG
AATCAATGTTCGATCTCGACACGGTCCTCAGCGGAGCTGATGACTTTTATTACTTACACACCGCTGTAGCGCCCCCACCCGTGGTGGTTGCTGACTTACCGACCGTGGCT
ACGGACGATGCATGTGCGGTTTGTATGGAGGATTTTCTACCGGATGAAGGCGGTAAACAGATCCCATGTGGCCATGTTTACCATCAATCTTGTATATCGTCTTGGCTCTC
CGTCGGCGATTCTTGTCCTCTCTGCCGCCGTCATATCGCCCCCGGCGACAAAACGGAGACTTCCAAAACCGTACAAGTTTAGTTTGGTTAGTTTTGTTTTGTGCTAAATT
TGAATATGAGATTTGGGATTCGGTTATCGTTATTCAATCAAAATGTGGTAAGATTCAAAAACTCACATTTTGAACAACTTGTATTCAACGATTACTAAGAGCAGAC
Protein sequenceShow/hide protein sequence
MATSANHAARYIMDIESMFDLDTVLSGADDFYYLHTAVAPPPVVVADLPTVATDDACAVCMEDFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTETS
KTVQV