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IVF0012832 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012832
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr03:17849143..17849313
RNA-Seq ExpressionIVF0012832
SyntenyIVF0012832
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006488 - dolichol-linked oligosaccharide biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041764.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]2.64e-2176.36Show/hide
Query:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
        Y    GITPFQAVYGR+PP LI YGDMETPNS LDQQL++RD+ LG LKEHLWVA
Subjt:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
KAA0047079.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.91e-2076.36Show/hide
Query:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
        Y    GITPFQAVYGR+PP LIYYGDMETPNS LDQQL+DRD+ LG LKEHL +A
Subjt:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
KAA0048037.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.91e-2076.36Show/hide
Query:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
        Y    GITPFQAVYGR+PP LIYYGDMETPNS LDQQL+DRD+ LG LKEHL +A
Subjt:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
TYK04120.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]4.67e-2280Show/hide
Query:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
        YQ   GITPFQAVYG++PP LIYYGDM+TPNS LDQQLQ+RDVILG LKEHL VA
Subjt:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
TYK05078.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.91e-2076.36Show/hide
Query:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
        Y    GITPFQAVYGR+PP LIYYGDMETPNS LDQQL+DRD+ LG LKEHL +A
Subjt:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
TrEMBL top hitse value%identityAlignment
A0A5A7SS61 Ty3/gypsy retrotransposon protein6.3e-1676.36Show/hide
Query:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
        Y    GITPFQAVYGR+PP LIYYGDMETPNS LDQQL+DRD+ LG LKEHL +A
Subjt:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
A0A5A7TEA3 Putative retroelement pol polyprotein2.2e-1676.36Show/hide
Query:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
        Y    GITPFQAVYGR+PP LI YGDMETPNS LDQQL++RD+ LG LKEHLWVA
Subjt:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
A0A5D3BYC3 Putative retroelement pol polyprotein1.7e-1680Show/hide
Query:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
        YQ   GITPFQAVYG++PP LIYYGDM+TPNS LDQQLQ+RDVILG LKEHL VA
Subjt:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
A0A5D3DM31 Ty3/gypsy retrotransposon protein6.3e-1676.36Show/hide
Query:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
        Y    GITPFQAVYGR+PP LIYYGDMETPNS LDQQL+DRD+ LG LKEHL +A
Subjt:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
A0A5D3DMY9 Ty3/gypsy retrotransposon protein6.3e-1676.36Show/hide
Query:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
        Y    GITPFQAVYGR+PP LIYYGDMETPNS LDQQL+DRD+ LG LKEHL +A
Subjt:  YQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACCAATGGAGAACTGGTATCACTCCTTTTCAAGCAGTGTACGGTCGGATTCCTCCACTGCTAATATATTATGGAGATATGGAAACCCCTAATTCTATGTTGGATCA
ACAATTGCAAGATAGAGATGTTATTTTGGGAGTATTGAAGGAGCATCTTTGGGTTGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTACCAATGGAGAACTGGTATCACTCCTTTTCAAGCAGTGTACGGTCGGATTCCTCCACTGCTAATATATTATGGAGATATGGAAACCCCTAATTCTATGTTGGATCA
ACAATTGCAAGATAGAGATGTTATTTTGGGAGTATTGAAGGAGCATCTTTGGGTTGCATAG
Protein sequenceShow/hide protein sequence
MYQWRTGITPFQAVYGRIPPLLIYYGDMETPNSMLDQQLQDRDVILGVLKEHLWVA